sci-biology/bfast: Drop old; move to autotools-utils; install docs in right place, #304603

Package-Manager: portage-2.2.0_alpha163/cvs/Linux x86_64
Manifest-Sign-Key: 0x8009D6F070EB7916

6 files changed, 32 insertions, 90 deletions

diff --git a/sci-biology/bfast/ChangeLog b/sci-biology/bfast/ChangeLog
index 51b096e0ddd9..2070e2e51f9f 100644
--- a/sci-biology/bfast/ChangeLog
+++ b/sci-biology/bfast/ChangeLog
@@ -1,6 +1,10 @@
 # ChangeLog for sci-biology/bfast
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.7 2011/11/28 02:15:41 weaver Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/ChangeLog,v 1.8 2013/02/17 10:20:34 jlec Exp $
+
+  17 Feb 2013; Justin Lecher <jlec@gentoo.org> -bfast-0.6.5a.ebuild,
+  -bfast-0.6.5a-r1.ebuild, bfast-0.7.0a.ebuild, metadata.xml:
+  Drop old; move to autotools-utils; install docs in right place, #304603
 
 *bfast-0.7.0a (28 Nov 2011)
 
diff --git a/sci-biology/bfast/Manifest b/sci-biology/bfast/Manifest
index 66bbd349c8dc..c92ce0f06af0 100644
--- a/sci-biology/bfast/Manifest
+++ b/sci-biology/bfast/Manifest
@@ -1,17 +1,14 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
-DIST bfast-0.6.5a.tar.gz 2456833 RMD160 05d06932e6dab6d627dceb0a8a72ad8055af14b9 SHA1 021b7ee8c12e88574ae6e943690a06237169c16e SHA256 5dbcb6216f45097a21abaa5c8bbbc6f5206f3b6263f43b2f1bb719604e76629b
-DIST bfast-0.7.0a.tar.gz 2456617 RMD160 95daa3e29c7c7d8156bd743a28f3bccfd9dc94f6 SHA1 ee43e3df024945b676efdc3c9f82e82eff98c1f7 SHA256 ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e
-EBUILD bfast-0.6.5a-r1.ebuild 801 RMD160 d6f7846f51bb67cc625f3ef11d747a2dd23a7fc4 SHA1 8fe805bf60d0d5081f32bcf4869954610192ca83 SHA256 9366300b090aa33db65e40ae04391a6223725c455f64828eb1522f0db293a716
-EBUILD bfast-0.6.5a.ebuild 788 RMD160 86525854802645725414c642b37ebe857f4f1233 SHA1 7a7e3aab31fa079a1384c04d3528a243bee4e80d SHA256 88011bcea99f58c35d39785b551f76bff8d47d26fdb3c5758610bb1911a5ab0b
-EBUILD bfast-0.7.0a.ebuild 800 RMD160 fbfaa79a6d0b13f0d6c7d7666ddb40bc20357ad7 SHA1 0b33a41e0ffb374051d9b676953700605ff43776 SHA256 904f987826590a7c5c83e359018336989df1e43107d6604328456a8bbdec09cf
-MISC ChangeLog 1322 RMD160 3771ab6b3706c895807d80e1b422d7c6fb3f736c SHA1 5c83c43f05ed1164422b8028465d1b2e117f8076 SHA256 af028296da80e9c794e4a9f185d948701bb1ea28d67e32c4e153198af4bfdaee
-MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
+DIST bfast-0.7.0a.tar.gz 2456617 SHA256 ed8de49693165a87d5dbef352207c424b1bf6f670a83acf49a4f4f188444995e SHA512 16e7ec5101c478f0dfc171016cbacb2b9240773e43b2d40eeb42d0e47afcee50a6dd5838e043a0326fc1ca9a87d3e55b42326a7f17b7c5654ef9825913860836 WHIRLPOOL f9098c00a2f328fd5116447aae86f0aed078f6c2e6a49a4459e09f0c2a2023e0d60be1893fc2337b85444c24efb2636953517eda2ced336d1bc6dc8d94706e6b
+EBUILD bfast-0.7.0a.ebuild 899 SHA256 245a0998f362c4c4f20d849be7a9d2e6dffa86666f7405155993a3668b629688 SHA512 23b5789c926a4eaaa2cbad5024e5e90c218a5a4dbff9189009ab4929de6868b4a55743e1fceb0f6799dcdca3f30eaf4183b4cb194e125012393d823cf4374f99 WHIRLPOOL 75369d9e08129630f5ab911711a10cc5962b4e265974a1d6c92714304ac31025cca4af075fe5054ccfa3ad401d78e55ca58e269f533e41ed759e391d13742db6
+MISC ChangeLog 1526 SHA256 10bdd0cecf46544230df883ada854f26b61ee97f728fea30774afe1d0008aea9 SHA512 a0a0db0ad70e68853faa9e239e67dcf4ee832f69eba4c964e7e6ffde77cd7dc43ead9a433221f0d1b4a66ac858d80a62d3c3d53ed416b0d7661cf7526559e58a WHIRLPOOL 99d9e31b9f5b504941a1fc73dc3baf96d09c3b1b8e8bcb0fb84cabde3ab6a1f46ba6fbab6e3ab799e7b5bb297a758d71bde5af17a1a8f7989a95ad3213586f15
+MISC metadata.xml 266 SHA256 98c7d1da8a728a1f1d796a79d51f25e4164e24048ec1aacbbf0ae2ffb171ff35 SHA512 879cdcca092d4c82b8c63672c91e08e7b01e81419d2c7c7b766de96ba2a32dd1e21c18968ed7172eec8604f52c92b19a31773f428bce9461d9b8190384680194 WHIRLPOOL 0f46288ab7090ad3da5b31816792427e4ad1a950e39a503bb406ebe8789cffedd9c85b46bfbf040fffb8aad443f512c28716a0a6436d0c06309155277060cdcd
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.11 (GNU/Linux)
+Version: GnuPG v2.0.19 (GNU/Linux)
 
-iEYEARECAAYFAk7S7tMACgkQ8xSwyhbn2OacLACeMeDxh9pSISF1880xiSybJ3pr
-MuIAmwbRegrvpF2bzery3xtwucVUxHpI
-=fEy6
+iEYEAREKAAYFAlEgrxkACgkQgAnW8HDreRaQTgCgzYGfc65jvPQqBTotvIZcJ33v
+QeUAnjBcxGLTyVM2syoEYekBlG6GmhqY
+=Hw0d
 -----END PGP SIGNATURE-----
diff --git a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild b/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
deleted file mode 100644
index a8abd53d3aa2..000000000000
--- a/sci-biology/bfast/bfast-0.6.5a-r1.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a-r1.ebuild,v 1.1 2011/10/06 12:59:24 jlec Exp $
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="Blat-like Fast Accurate Search Tool"
-HOMEPAGE="https://sourceforge.net/projects/bfast/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="dev-perl/XML-Simple"
-
-src_prepare() {
-	sed \
-		-e 's/-m64//' \
-		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
-		-e 's:-g -O2::g' \
-		-i configure.ac || die
-	sed \
-		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
-		-i tests/*sh || die
-	eautoreconf
-}
diff --git a/sci-biology/bfast/bfast-0.6.5a.ebuild b/sci-biology/bfast/bfast-0.6.5a.ebuild
deleted file mode 100644
index c086febcb233..000000000000
--- a/sci-biology/bfast/bfast-0.6.5a.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.6.5a.ebuild,v 1.1 2011/05/18 16:11:49 weaver Exp $
-
-EAPI="2"
-
-inherit autotools
-
-DESCRIPTION="Blat-like Fast Accurate Search Tool"
-HOMEPAGE="https://sourceforge.net/projects/bfast/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=""
-RDEPEND="dev-perl/XML-Simple"
-
-src_prepare() {
-	sed -i -e 's/-m64//' \
-		-e 's/CFLAGS="${default_CFLAGS} ${extended_CFLAGS}"/CFLAGS="${CFLAGS} ${default_CFLAGS} ${extended_CFLAGS}"/' \
-		configure.ac || die
-	eautoreconf
-}
-
-src_install() {
-	einstall || die
-	dodoc AUTHORS NEWS README
-}
-
-src_test() {
-	emake check || die
-}
diff --git a/sci-biology/bfast/bfast-0.7.0a.ebuild b/sci-biology/bfast/bfast-0.7.0a.ebuild
index 861e8a93a0f4..a4313b9a212c 100644
--- a/sci-biology/bfast/bfast-0.7.0a.ebuild
+++ b/sci-biology/bfast/bfast-0.7.0a.ebuild
@@ -1,10 +1,12 @@
-# Copyright 1999-2011 Gentoo Foundation
+# Copyright 1999-2013 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.1 2011/11/28 02:15:41 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/bfast/bfast-0.7.0a.ebuild,v 1.2 2013/02/17 10:20:34 jlec Exp $
 
-EAPI=4
+EAPI=5
 
-inherit autotools
+AUTOTOOLS_AUTORECONF=true
+
+inherit autotools-utils
 
 DESCRIPTION="Blat-like Fast Accurate Search Tool"
 HOMEPAGE="https://sourceforge.net/projects/bfast/"
@@ -27,5 +29,10 @@ src_prepare() {
 	sed \
 		-e 's:. test.definitions.sh:. ./test.definitions.sh:g' \
 		-i tests/*sh || die
-	eautoreconf
+
+	sed \
+		-e '/docdir/d' \
+		-i Makefile.am || die
+
+	autotools-utils_src_prepare
 }
diff --git a/sci-biology/bfast/metadata.xml b/sci-biology/bfast/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/bfast/metadata.xml
+++ b/sci-biology/bfast/metadata.xml
@@ -1,9 +1,9 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-	<maintainer>
-		<email>weaver@gentoo.org</email>
-		<name>Andrey Kislyuk</name>
-	</maintainer>
-	<herd>sci-biology</herd>
+  <maintainer>
+    <email>weaver@gentoo.org</email>
+    <name>Andrey Kislyuk</name>
+  </maintainer>
+  <herd>sci-biology</herd>
 </pkgmetadata>