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authorJustin Lecher <jlec@gentoo.org>2013-02-18 12:32:23 +0000
committerJustin Lecher <jlec@gentoo.org>2013-02-18 12:32:23 +0000
commit93bfcf5f1847c290aefbdc377ee4d8d353b4efb3 (patch)
tree5233cba021a959f7bc595370610140e17b68d79e /sci-biology
parentVersion bump to 0.7 fixing bug#412771 and bug#431134. (diff)
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sci-biology/allpathslg: Drop old
Package-Manager: portage-2.2.0_alpha163/cvs/Linux x86_64 Manifest-Sign-Key: 0x70EB7916
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/allpathslg/ChangeLog8
-rw-r--r--sci-biology/allpathslg/Manifest22
-rw-r--r--sci-biology/allpathslg/allpathslg-41839.ebuild35
-rw-r--r--sci-biology/allpathslg/metadata.xml10
4 files changed, 16 insertions, 59 deletions
diff --git a/sci-biology/allpathslg/ChangeLog b/sci-biology/allpathslg/ChangeLog
index 58636d308f52..1930bda93bd1 100644
--- a/sci-biology/allpathslg/ChangeLog
+++ b/sci-biology/allpathslg/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/allpathslg
-# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.10 2012/12/14 09:57:17 ulm Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/ChangeLog,v 1.11 2013/02/18 12:32:22 jlec Exp $
+
+ 18 Feb 2013; Justin Lecher <jlec@gentoo.org> -allpathslg-41839.ebuild,
+ metadata.xml:
+ Drop old
14 Dec 2012; Ulrich Müller <ulm@gentoo.org> allpathslg-37578.ebuild,
allpathslg-41839.ebuild, allpathslg-42337.ebuild:
diff --git a/sci-biology/allpathslg/Manifest b/sci-biology/allpathslg/Manifest
index 58ad3449e32b..7907c4301f7c 100644
--- a/sci-biology/allpathslg/Manifest
+++ b/sci-biology/allpathslg/Manifest
@@ -2,27 +2,15 @@
Hash: SHA256
DIST allpathslg-37578.tar.gz 2511464 SHA256 b4fdb6e7cc523cdb2831562bfabdf640dc2eb89f09d626ffeb4d1de358f46056 SHA512 63fd9162e558fdd15958a41bb8ceee3c100d1e933f8c2e02a3ae3cd8f42a7b32240f6863dae7444562257b0444eb894fbc52292861837efcad465fecb257d767 WHIRLPOOL ceb8569e6c56c7d72f102fc6bbf69f8d1022ed3c518407b028a07c4c9adadfe056828b7f4298a74eefbca188033cc1cdc732c79e6d43baf60a7566f7f2fda5d1
-DIST allpathslg-41839.tar.gz 2730906 SHA256 25f3b67d2ce1cde0fa674762da8258f244baefa1593cfc86a5125d9988ddbadd SHA512 9f721ebccea6cb77fb2a201482c4aa4a1dc31e2eba957adf2686eb5e66aae15bdb88da512b8d22fd5baaba95b9b314f7acb5e31838cdc7d519a779b7cb852418 WHIRLPOOL 4e3c4af7ff042d5bc4153bab71ab3404c33907739e6b5ef9ddaa2d7ef19c2ac159d8f31763842a26a06c8995a5e193940925f39109656bd2ba68ea0306886593
DIST allpathslg-42337.tar.gz 2739498 SHA256 a2c8f64f6ba1705b2331ca07761d189183c6745f8717ffc67ee98e9e3ca3dba6 SHA512 7595fbe14a5029578b57d16f781cbb2a0f0ad6b1af2dd770e2274f8fe2e11d0013fdff12cc85c1be748e769ffb23b7d5fe30920feef38e0e8b947d05b8bda31c WHIRLPOOL 79bda55d49877641eb55630950472a06d8f25db467dbfecde8b4d04c3ce16c071d32dd312fa9a0f72723bf4caa8f9b1d0346acf438b9671b4bed2c0672c788b9
EBUILD allpathslg-37578.ebuild 933 SHA256 367abfa3998a40eee16ddc5e56d1e95d8fe7beaa9d6909dee12209f9ee1d80db SHA512 44e732f6f0f2e249ea7e3f639f5267a89811ebdfa2ae09b05bcb59db89cbda1e24b1f102ce8f52c38a2e8a5d7198efd34e78be68db4a9125326ca01071dc23e2 WHIRLPOOL f5ea549ded34372ef662b16af9bd735c4bd656a785a9aa2dfe92cec4b1926ba3ee1b4cc67239b6e5fefee227cfc3eb9a3a75598ce9c1c842b6e05902097afb47
-EBUILD allpathslg-41839.ebuild 900 SHA256 4d327c8dd956d23a7800157a4a127825b1e5f67e009322fdf8e2612a7e84912d SHA512 ca3bc85fe78c01978b0d79f7794fc38a7c86c86690096e56f5f5ccb3179d5495da2a971bce1d1af9913abfca425f84bfecb6d01843ca04b9f79d40d7ac57c201 WHIRLPOOL 0ad7e28b1506eddd01da48db108ed50a9993c4a83058fff6a6dfe3bbf9528ab53a7aadea52d9f57d76e48118ccf2c03b2069bbadfa7b5183410b76e33c813416
EBUILD allpathslg-42337.ebuild 900 SHA256 6d4971d2d0b4541a11ad7513a87b93a42d76a4f4154b622cd358849f8e2f4b05 SHA512 170ee01fb2cacdb82cff92488b3f5caa1e0fbf301cd9ebddafe4cb5380d4fb7eed70e1e9f3e7fdd9a720cdc9c84951cd2a77c726fa730473cc4a2c83a869a55e WHIRLPOOL 0eba1d9bc284026d5fcaa79e8a512172fa1fe6909f94c472f0bb8ae00a77d753dcee1181d5e1797657113505bd7506a15c3da438725da536fafe7d899a946cd5
-MISC ChangeLog 1837 SHA256 ec28ae52640065a0dd806a6f88babeae8706c8b4709a97deea408353d467c256 SHA512 8603b53f9c29f1ca9b82ec4ea030ea9bb0d56949228e0b40e3256350846157a109119576a0c53bbee198d87a62c5ba8e106f7a0b20c9f109f5cf1b26f807afc1 WHIRLPOOL 82966c3ac42d08507a5f835fe680de5364cd0a4cf16475868e8e656cd7db35932a7252f9d29643c2a0a709ccd09f73e9044232e0784f483836ee9a5dcaba6c91
-MISC metadata.xml 259 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 SHA512 c3aea4d69d75075af0108a03b7e109cfed6a1fe324f8ccbda3d4e5ca8a5070f1b24ddeb46b64787e10fd22252d867abcee1f31316d602f7e32fe3c990ae60d74 WHIRLPOOL e50da2f26fd4c908446d22da3edb595d60e61d72def374be46440358802a211fc34045b7ad970c4f94b57f7b17ff24cfe64dc94254fea20e047f1fbbbcae0c64
+MISC ChangeLog 1939 SHA256 86efc05991713041f6d551a307cd9f83406e6d49a23e499dbc1e68bb8937c493 SHA512 c7f1409e917b03603a36427d2ca49b6573c7110e0412fd036905f5ff6071b6418b1565d3a7da88be56a3c64cf33bcff41a2609d49fde018d870ac2779230e855 WHIRLPOOL cfb0e6e95df7bbe7cebe0b28b8f4abae2d5f289eb4713a71bb00c6b3ebd79d5da9a54e169abd5a7cee56795c6ea0f176bb027ece075006ac07a4bf31450be910
+MISC metadata.xml 266 SHA256 98c7d1da8a728a1f1d796a79d51f25e4164e24048ec1aacbbf0ae2ffb171ff35 SHA512 879cdcca092d4c82b8c63672c91e08e7b01e81419d2c7c7b766de96ba2a32dd1e21c18968ed7172eec8604f52c92b19a31773f428bce9461d9b8190384680194 WHIRLPOOL 0f46288ab7090ad3da5b31816792427e4ad1a950e39a503bb406ebe8789cffedd9c85b46bfbf040fffb8aad443f512c28716a0a6436d0c06309155277060cdcd
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diff --git a/sci-biology/allpathslg/allpathslg-41839.ebuild b/sci-biology/allpathslg/allpathslg-41839.ebuild
deleted file mode 100644
index ff66b9feaf5e..000000000000
--- a/sci-biology/allpathslg/allpathslg-41839.ebuild
+++ /dev/null
@@ -1,35 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpathslg/allpathslg-41839.ebuild,v 1.3 2012/12/14 09:57:17 ulm Exp $
-
-EAPI=4
-
-inherit autotools flag-o-matic
-
-DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
-HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
-SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
-
-LICENSE="MIT"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64"
-
-DEPEND="
- dev-libs/boost
- !sci-biology/allpaths
- sci-biology/vaal"
-RDEPEND=""
-
-src_prepare() {
- sed -i 's/-ggdb3//' configure.ac || die
- eautoreconf
-}
-
-src_install() {
- einstall || die
- # Provided by sci-biology/vaal
- for i in QueryLookupTable ScaffoldAccuracy MakeLookupTable Fastb ShortQueryLookup; do
- rm "${D}/usr/bin/$i" || die
- done
-}
diff --git a/sci-biology/allpathslg/metadata.xml b/sci-biology/allpathslg/metadata.xml
index 3302123e5718..fc7c76942a10 100644
--- a/sci-biology/allpathslg/metadata.xml
+++ b/sci-biology/allpathslg/metadata.xml
@@ -1,9 +1,9 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
- <maintainer>
- <email>weaver@gentoo.org</email>
- <name>Andrey Kislyuk</name>
- </maintainer>
- <herd>sci-biology</herd>
+ <maintainer>
+ <email>weaver@gentoo.org</email>
+ <name>Andrey Kislyuk</name>
+ </maintainer>
+ <herd>sci-biology</herd>
</pkgmetadata>