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Package-Manager: portage-2.2_rc65/cvs/Linux x86_64

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diff --git a/sci-chemistry/dssp/ChangeLog b/sci-chemistry/dssp/ChangeLog
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index 000000000000..1b0b32a1b6db
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+++ b/sci-chemistry/dssp/ChangeLog
@@ -0,0 +1,21 @@
+# ChangeLog for sci-chemistry/dssp
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/ChangeLog,v 1.1 2010/03/07 10:13:05 jlec Exp $
+
+*dssp-070831 (07 Mar 2010)
+
+  07 Mar 2010; Justin Lecher (jlec) <jlec@gentoo.org> +dssp-070831.ebuild,
+  +files/Makefile, +metadata.xml:
+  The DSSP program was designed by Wolfgang Kabsch and Chris Sander to
+  standardize secondary structure assignment. DSSP is a database of
+  secondary structure assignments (and much more) for all protein entries in
+  the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP
+  entries from PDB entries.
+
+  If you use DSSP, please quote:
+
+  Dictionary of protein secondary structure: pattern recognition of
+  hydrogen-bonded and geometrical features.
+  Biopolymers. 1983 Dec;22(12):2577-637.
+  PMID: 6667333; UI: 84128824.
+
diff --git a/sci-chemistry/dssp/Manifest b/sci-chemistry/dssp/Manifest
new file mode 100644
index 000000000000..5e9a5a28fcd7
--- /dev/null
+++ b/sci-chemistry/dssp/Manifest
@@ -0,0 +1,15 @@
+-----BEGIN PGP SIGNED MESSAGE-----
+Hash: SHA1
+
+AUX Makefile 237 RMD160 e7c5528bcf5d5d514c0ff2a58019d1570c3ba932 SHA1 497481dac448abe16e73517d6c25ab760b992bea SHA256 4caa74d9736641485b2e977f0b810f692b8afde933d80947da338c56a6f53510
+DIST dssp-070831cmbi.tar.gz 451919 RMD160 656e1be2c5db6150a3db2785bcaf874632b3cf27 SHA1 40ffc8fcd1400eb4675285995f1c366ff6612004 SHA256 bf5cdd970f92fd80268b87a468d4efe891d3227fd15136147889605299f75661
+EBUILD dssp-070831.ebuild 1142 RMD160 cfebc59b1b6fab822af6c7a07cacf0007499ff3b SHA1 ae9833c7ee5571e068a64f1fef22215e3be2fc1d SHA256 6f810bed65787385c29293a4d2c69ceca9d31195db380c0a3f2674e07c0464b3
+MISC ChangeLog 885 RMD160 3940901e242f36f18cef226771a75f60a4c5f292 SHA1 8e017382132199a2f4c34c98357af4a5edc77a2a SHA256 c9cc64cbbd65efb237aa1cd16c0f881ffa99f512631a502092a9a7b20c30c825
+MISC metadata.xml 216 RMD160 04a6fc4e2160b439296b52aa97d5b7d83af75508 SHA1 9561c9e6eada6aac9b503407917900529ce703e9 SHA256 24f5c205c2655ef27138c8aa087701626f5b4c666229c9ef7fe814e63ea2e776
+-----BEGIN PGP SIGNATURE-----
+Version: GnuPG v2.0.14 (GNU/Linux)
+
+iEYEARECAAYFAkuTfDYACgkQgAnW8HDreRa6YQCgj0ugYWxZ44+pfdDa7GfOG5TF
+c7gAn3Qa5KWAF0vuzvow2zmgYc4qCpJh
+=chJ1
+-----END PGP SIGNATURE-----
diff --git a/sci-chemistry/dssp/dssp-070831.ebuild b/sci-chemistry/dssp/dssp-070831.ebuild
new file mode 100644
index 000000000000..30dde1d70ade
--- /dev/null
+++ b/sci-chemistry/dssp/dssp-070831.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/dssp/dssp-070831.ebuild,v 1.1 2010/03/07 10:13:05 jlec Exp $
+
+EAPI="2"
+
+inherit toolchain-funcs flag-o-matic
+
+DESCRIPTION="The protein secondary structure standard"
+HOMEPAGE="http://swift.cmbi.ru.nl/gv/dssp/"
+#SRC_URI="ftp://ftp.cmbi.ru.nl/pub/molbio/software/dsspcmbi.tar.gz"
+SRC_URI="${P}cmbi.tar.gz"
+
+LICENSE="free-noncomm"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+RESTRICT="fetch"
+
+S="${WORKDIR}"/${PN}
+
+pkg_nofetch() {
+	elog "Download ftp://ftp.cmbi.ru.nl/pub/molbio/software/dsspcmbi.tar.gz --"
+	elog "Rename it to ${A} and place it in ${DISTDIR}"
+}
+
+src_prepare() {
+	cp "${FILESDIR}"/Makefile .
+	append-flags -DGCC
+}
+
+src_compile() {
+	emake CC="$(tc-getCC)" || die
+}
+
+src_install() {
+	dobin dssp || die
+	dodoc README.TXT || die
+	dohtml index.html || die
+}
+
+pkg_postinst() {
+	elog "Go to ${HOMEPAGE} and return the license agreement."
+	elog "One of its requirements is citing the article:"
+	elog "Kabsch, W. & Sander, C. Biopolymers 22:2577-2637 (1983)."
+}
diff --git a/sci-chemistry/dssp/files/Makefile b/sci-chemistry/dssp/files/Makefile
new file mode 100644
index 000000000000..575202ebbe2d
--- /dev/null
+++ b/sci-chemistry/dssp/files/Makefile
@@ -0,0 +1,7 @@
+#OBJ = AccSurf.o CalcAccSurf.o Contacts.o Date.o Dssp.o DsspCMBI.o p2clib.o Vector.o
+OBJ = AccSurf.o CalcAccSurf.o Contacts.o Date.o DsspCMBI.o p2clib.o Vector.o
+
+LIBS = -lm
+
+dssp: $(OBJ)
+	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(OBJ) $(LIBS)
diff --git a/sci-chemistry/dssp/metadata.xml b/sci-chemistry/dssp/metadata.xml
new file mode 100644
index 000000000000..c6856dc7f2cf
--- /dev/null
+++ b/sci-chemistry/dssp/metadata.xml
@@ -0,0 +1,8 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci</herd>
+<maintainer>
+  <email>jlec@gentoo.org</email>
+</maintainer>
+</pkgmetadata>