New version

Package-Manager: portage-2.0.51.22-r2

1 files changed, 126 insertions, 0 deletions

diff --git a/sci-chemistry/nmrpipe/nmrpipe-20050616.ebuild b/sci-chemistry/nmrpipe/nmrpipe-20050616.ebuild
new file mode 100644
index 000000000000..8bb99fa7ab03
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+++ b/sci-chemistry/nmrpipe/nmrpipe-20050616.ebuild
@@ -0,0 +1,126 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/nmrpipe/nmrpipe-20050616.ebuild,v 1.1 2005/07/22 16:57:30 ribosome Exp $
+
+DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
+# The specific terms of this license are printed automatically on startup
+# by some NMRPipe applications. The user also has to accept them before
+# downloading the package.
+LICENSE="as-is"
+HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/"
+# The NMRPipe installation script which we are not allowed to modify
+# requires all the following to be present for a complete installation.
+# Many of the bundled applications and libraries are afterwards deleted
+# (by this ebuild). The Gentoo provided applications and libraries are
+# used instead. The notable exception is the Tcl/Tk libraries; NMRPipe
+# requires a modified version of these. Unfortunately, this requires to
+# redefine the location of the libraries, which is done by sourcing an
+# initialisation script. NMRPipe users are used to this, and this ebuild
+# also prints a notice to this effect.
+SRC_URI="${PN}.linux9.tar.Z
+	xview_fonts.tar.Z
+	xview.linux9.tar.Z
+	dyn.tar.Z
+	mfr.tar.Z
+	pdbH.tar.Z
+	valpha.tar
+	acme.tar.Z
+	binval.com
+	install.com"
+# The maintainer absolutely wants to control redistribution.
+RESTRICT="fetch"
+
+SLOT="0"
+IUSE=""
+# Right now, precompiled executables are only available for Linux on the
+# x86 architecture. The maintainer chose to keep the sources closed, but
+# says he will gladly provide precompiled executables for other platforms
+# if there are such requests.
+KEYWORDS="-* ~x86"
+
+RDEPEND="virtual/x11
+	dev-lang/f2c
+	dev-lang/tcl
+	dev-lang/tk
+	dev-tcltk/blt
+	media-gfx/gnuplot
+	app-shells/tcsh
+	sys-libs/libtermcap-compat
+	x11-libs/xview
+	sci-chemistry/rasmol"
+
+S="${WORKDIR}"
+NMRBASE="/opt/${PN}"
+
+pkg_nofetch() {
+	einfo "Please visit:"
+	einfo "\t${HOMEPAGE}"
+	einfo
+	einfo "Contact the package maintainer, then download the following files:"
+	for i in ${A}; do
+		einfo "\t${i}"
+	done
+	einfo
+	einfo "Place the downloaded files in your distfiles directory:"
+	einfo "\t${DISTDIR}"
+	echo
+}
+
+src_unpack() {
+	# The installation script will unpack the package. We just provide symlinks
+	# to the archive files, ...
+	for i in ${PN}.linux9.tar.Z xview_fonts.tar.Z xview.linux9.tar.Z \
+		dyn.tar.Z mfr.tar.Z pdbH.tar.Z valpha.tar acme.tar.Z; do
+		ln -s "${DISTDIR}/${i}" "${i}"
+	done
+	# ... copy the installation scripts ...
+	cp ${DISTDIR}/{binval.com,install.com} .
+	# ... and make the installation scripts executable.
+	chmod +x "binval.com" "install.com"
+}
+
+src_compile() {
+	# Unset DISPLAY to avoid the interactive graphical test.
+	DISPLAY="" ./install.com "${S}" || die
+	# Remove the symlinks for the archives and the installation scripts.
+	for i in ${A}; do
+		rm "${i}"
+	done
+	# Remove some of the bundled applications and libraries; they are
+	# provided by Gentoo instead.
+	rm -r "xview" "XView" nmrbin.linux9/{0.0,lib,*timestamp,xv,gnuplot*,rasmol*}
+	# Remove the initialisation script generated during the installation.
+	# It contains incorrect hardcoded paths; only the "nmrInit.com" script
+	# should be used.
+	rm "com/nmrInit.linux9.com"
+	# Make the precompiled Linux binaries executable.
+	chmod +x nmrbin.linux9/*
+	# Set the correct path to NMRPipe in the auxiliary scripts.
+	cd "${S}/com"
+	for i in *; do
+		sed -e "s%/u/delaglio%${NMRBASE}%" -i "${i}" || die
+	done
+}
+
+src_install() {
+	newenvd "${FILESDIR}/${P}-env" "40${PN}"
+	insinto "/opt/${PN}"
+	insopts "-m0755"
+	doins -r *
+	dosym "/opt/${PN}/nmrbin.linux9" "/opt/${PN}/bin"
+}
+
+pkg_postinst() {
+	echo
+	ewarn "Before using NMRPipe applications, users must source the following"
+	ewarn "csh script, which will set the necessary environment variables:"
+	ewarn "\t/opt/${PN}/com/nmrInit.com"
+	ewarn
+	ewarn "Be aware that this script redefines the locations of the Tcl"
+	ewarn "libraries. This could break other non-NMRPipe Tcl applications"
+	ewarn "run in the same session."
+	ewarn
+	ewarn "Using Dynamo does not require running an additional initialisation"
+	ewarn "script. The necessary environment variables should already be set."
+	echo
+}