sci-libs/scipy: Version Bump

Package-Manager: portage-2.2.8-r1/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!

3 files changed, 165 insertions, 16 deletions

diff --git a/sci-libs/scipy/ChangeLog b/sci-libs/scipy/ChangeLog
index 27425215854c..bdeee0c909ae 100644
--- a/sci-libs/scipy/ChangeLog
+++ b/sci-libs/scipy/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-libs/scipy
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.111 2013/12/26 20:52:20 jlec Exp $
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/ChangeLog,v 1.112 2014/02/21 14:13:08 jlec Exp $
+
+*scipy-0.13.3 (21 Feb 2014)
+
+  21 Feb 2014; Justin Lecher <jlec@gentoo.org> +scipy-0.13.3.ebuild:
+  Version Bump
 
 *scipy-0.13.2-r1 (26 Dec 2013)
 
diff --git a/sci-libs/scipy/Manifest b/sci-libs/scipy/Manifest
index d7bf699ce3b7..0da906c0c944 100644
--- a/sci-libs/scipy/Manifest
+++ b/sci-libs/scipy/Manifest
@@ -15,27 +15,31 @@ DIST scipy-0.13.0-ref.pdf 14748179 SHA256 52caa5fd7e74f2e5a78f26296d2150808eee9e
 DIST scipy-0.13.0.tar.gz 10093476 SHA256 e7fe93ffc4b55d8357238406b1b9e47a4f932474238e2bfdb552423bcd45dc5e SHA512 5bd8f032560dba4796942c8cbbd341c449aae10c3de6023c62bf754bb48d84ba821dbbc24bfe371781e8a06958c104baf670bf167597ec5d4fd5fd2eeadc54b5 WHIRLPOOL 39df9a0c03962f0b5c16efe38d8900c523e45426e228951a5d84fbf7b742cd37c8775f628e6973da572b3b7e088aecba1f7277dbf1fd6e3b72f78a8ad6599a06
 DIST scipy-0.13.1.tar.gz 10092739 SHA256 409f429a85592c8a99afa2fc047b80efdbd7ab0c9aa1f1effdd4692958aef228 SHA512 a5522a368a51f7a746852e61ac60f2b46f4b18a323ebaac9e554788d31fbd270757aab1edea3899970c6d753540120dd52a7248d46142c14da1938fc48a40a12 WHIRLPOOL f02265cbf8918f1b2da708dc8f21b2ac67fbc14e816cae69bc97c31b7736c32a8bc5cd710832f0ae0d459ff0732d4ab40ab1ef6604d12e6cc998cbee0608d005
 DIST scipy-0.13.2.tar.gz 10144409 SHA256 485f194c7fe46da92e63bff524346ccaed4040c27df536bbde7b1edc9a07b449 SHA512 ab9acb0a8b388eaf8528be4fd0bcbf954e9a6337a874d666bf1590d396018c5b818c08d0227b4655f45aa408d4e0f1c500588016a90c2dba0f03e2aa3f6a5c60 WHIRLPOOL 99258cc7e1438535849b85727afa5730be1a1b9f179515c1e1c297e825a56fae2ac385775a40156431c0031e08aa198387667fa92cb2f36fc5c49dadd9040013
+DIST scipy-0.13.3.tar.gz 10712509 SHA256 a9e33c7ee060c35cd5c6ee3ac9e5e9bbb99219d7ea8c89537c2e80e581670266 SHA512 8cf32c8ea4d8fe903bafae23dedb4d4ba80b580f5bddf351ea1d2bbbdcbd753389d7992f2db39d7a6b3f0629674daa697c2660d25396ef506f1e3b81c817170a WHIRLPOOL 5065bf05263d8633063705a2d55236e57e4d0861c105b50e7e5d8a1341e4840df37bbad16fc2d2c9f7d95880f875803b96d129f4e766b8bc5a13e926bc4e216d
 EBUILD scipy-0.12.1.ebuild 3794 SHA256 aa1a59f045d86e2cb7016682ea841913bb8429b87a3095a7a00ce3f75b2c48d8 SHA512 856b8b23e6a8ab3efb6526e7cc94b8eb742d04cfa1e460ee9364265743d655cfed4cbb296d41c07ccae3dc4d3945f41a53e0307b87a740b4b7f3fbae6d161f1f WHIRLPOOL d837a98eabb2e5feb143d94790f79c622ab8eba6f4d868bfa2bb0f010af29460389d7d46d6d2be5d11b679624540f87fb8f93a9f69982824397703d0dec4e9e0
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 EBUILD scipy-0.13.1-r2.ebuild 3788 SHA256 83773fbd8dc2906d2e809378e45f939d88211785f12014db26cc34e8adc7aa24 SHA512 1a48a5ee02b1c53860cd9afd53d78e2f115ec92b431053f8ebb3de74c13e8aa1a52fbff33d57043390b70aa64171f0f5035f23e0a1a333cb0d15bc2f11284c0c WHIRLPOOL 18333f4e53ac4a88355b4bb4a02cd1a3eb22d3d312ace1aa26e2f07eeefd5cfa03113ef1cd01a2ed85798b5e28a017a4c54ac80bed12652ccf33b1e4c005a05d
 EBUILD scipy-0.13.2-r1.ebuild 3856 SHA256 fe6cb1e6fd7a8dafe8bbc0d8158ef5d7ba4ee4d8c7d1a5d095a3f5e010465f11 SHA512 fadf57e152b9ba2b8ad0b08274d2c0e9ddd9044aaa8e64e1ed1d3a76ce092d776c55876d72b75a4d2c0fb1e34e6f931cf9f074a44fdbab13d1cf3ac21fcbdffe WHIRLPOOL 07c78c273d806476e9bc0d56adaae39b13bbc495d622a8d88f81580650cc73754f7bf2170d864c8504d012cc90e2cd1a485f13f84c999b7d7b82345c73cca459
 EBUILD scipy-0.13.2.ebuild 3821 SHA256 7fbd1d0be83c47969d44a79eab7b5d5045d4fc02633e038a7ce870a782c3aca8 SHA512 4a9a5a14d1386dfdf46dc1701508b0be052ab9b6cf05e7972689d6842808491eb952cf2269fcf926aec8664ed40953fe11f62b3bfb5f2bc9dc940d60681a642d WHIRLPOOL 45018cacda91ce0f7ea2692994ea6e608fa7996a6f92e6eb8f73c0bd4f29d42fe0e3c4efc1d60cd3fddc082f961695a4706bfdcf6caac3a693b4657c76cf4346
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+EBUILD scipy-0.13.3.ebuild 3853 SHA256 c769fe9b298ac92fd88b75470efaccaf9fcc7a22745de08bdf59d21c6b4586a3 SHA512 015491bc9286a939c1308848c077c83dddf0e174b5dbb770000635d4dcaa282c7c564cc67f70e913c2034209d5246b6fb4735c47309229e998fdb634d403bb48 WHIRLPOOL ee56ba4bd7e1e9de168daab075056e1ebae0736e0000414c4800edded9b1c807ff8d19c3b06b782d161704f6679b2558da8c7c99a6b20b6afe724a7927127195
+MISC ChangeLog 20275 SHA256 4e82f8b49b14d460dab974a04eb0b1a222bd1d906ee901178ec5b35bcd8fb9db SHA512 4b5ae7ab5b7cd0793465809955264935533dad83116ce3d9a7b046988fa19c628b07aa536f3321d3a3f153ccda594883282f2461afba3787a9e53fa0268e3123 WHIRLPOOL e3e065a24cea2dacddcc0d230bdb6a71465acf34b167f8edf83ff5591a5856cf17607d9706415ed417efb0d2caf4bdb7207a486d260f6b141426932f56df6049
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diff --git a/sci-libs/scipy/scipy-0.13.3.ebuild b/sci-libs/scipy/scipy-0.13.3.ebuild
new file mode 100644
index 000000000000..a760a80ae646
--- /dev/null
+++ b/sci-libs/scipy/scipy-0.13.3.ebuild
@@ -0,0 +1,140 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-libs/scipy/scipy-0.13.3.ebuild,v 1.1 2014/02/21 14:13:08 jlec Exp $
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_6,2_7,3_2,3_3} )
+
+inherit eutils fortran-2 distutils-r1 flag-o-matic multilib toolchain-funcs
+
+DESCRIPTION="Scientific algorithms library for Python"
+HOMEPAGE="http://www.scipy.org/"
+SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz
+	doc? (
+		http://docs.scipy.org/doc/${PN}-0.13.0/${PN}-html.zip -> ${PN}-0.13.0-html.zip
+		http://docs.scipy.org/doc/${PN}-0.13.0/${PN}-ref.pdf -> ${PN}-0.13.0-ref.pdf
+	)"
+
+LICENSE="BSD LGPL-2"
+SLOT="0"
+IUSE="doc sparse test"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~x86-macos"
+
+CDEPEND="
+	dev-python/numpy[lapack,${PYTHON_USEDEP}]
+	sci-libs/arpack
+	virtual/cblas
+	virtual/lapack
+	sparse? ( sci-libs/umfpack )"
+DEPEND="${CDEPEND}
+	dev-lang/swig
+	>=dev-python/cython-0.19.1[${PYTHON_USEDEP}]
+	virtual/pkgconfig
+	doc? ( app-arch/unzip )
+	test? (
+		dev-python/mpmath[${PYTHON_USEDEP}]
+		dev-python/nose[${PYTHON_USEDEP}]
+		)"
+
+RDEPEND="${CDEPEND}
+	virtual/python-imaging[${PYTHON_USEDEP}]"
+
+DOCS=( HACKING.rst.txt THANKS.txt )
+
+DISTUTILS_IN_SOURCE_BUILD=1
+
+src_unpack() {
+	unpack ${P}.tar.gz
+	if use doc; then
+		unzip -qo "${DISTDIR}"/${PN}-0.13.0-html.zip -d html || die
+	fi
+}
+
+pc_incdir() {
+	$(tc-getPKG_CONFIG) --cflags-only-I $@ | \
+		sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//'
+}
+
+pc_libdir() {
+	$(tc-getPKG_CONFIG) --libs-only-L $@ | \
+		sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//'
+}
+
+pc_libs() {
+	$(tc-getPKG_CONFIG) --libs-only-l $@ | \
+		sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \
+		-e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \
+		| sort | uniq | tr '\n' ','
+}
+
+python_prepare_all() {
+	# scipy automatically detects libraries by default
+	export {FFTW,FFTW3,UMFPACK}=None
+	use sparse && unset UMFPACK
+	# the missing symbols are in -lpythonX.Y, but since the version can
+	# differ, we just introduce the same scaryness as on Linux/ELF
+	[[ ${CHOST} == *-darwin* ]] \
+		&& append-ldflags -bundle "-undefined dynamic_lookup" \
+		|| append-ldflags -shared
+	[[ -z ${FC}  ]] && export FC="$(tc-getFC)"
+	# hack to force F77 to be FC until bug #278772 is fixed
+	[[ -z ${F77} ]] && export F77="$(tc-getFC)"
+	export F90="${FC}"
+	export SCIPY_FCONFIG="config_fc --noopt --noarch"
+	append-fflags -fPIC
+
+	local libdir="${EPREFIX}"/usr/$(get_libdir)
+	cat >> site.cfg <<-EOF
+		[blas]
+		include_dirs = $(pc_incdir cblas)
+		library_dirs = $(pc_libdir cblas blas):${libdir}
+		blas_libs = $(pc_libs cblas blas)
+		[lapack]
+		library_dirs = $(pc_libdir lapack):${libdir}
+		lapack_libs = $(pc_libs lapack)
+	EOF
+
+	# Drop hashes to force rebuild of cython based .c code
+	rm cythonize.dat || die
+
+	local PATCHES=(
+		"${FILESDIR}"/${PN}-0.12.0-blitz.patch
+		"${FILESDIR}"/${PN}-0.12.0-restore-sys-argv.patch
+		"${FILESDIR}"/${PN}-0.12.0-cephes-missing-include.patch
+	)
+	distutils-r1_python_prepare_all
+}
+
+python_compile() {
+	${EPYTHON} tools/cythonize.py || die
+	distutils-r1_python_compile ${SCIPY_FCONFIG}
+}
+
+python_test() {
+	# fails with bdist_egg. should it be fixed in distutils-r1 eclass?
+	distutils_install_for_testing ${SCIPY_FCONFIG}
+	cd "${TEST_DIR}" || die "no ${TEST_DIR} available"
+	"${EPYTHON}" -c "
+import scipy, sys
+r = scipy.test('fast',verbose=2)
+sys.exit(0 if r.wasSuccessful() else 1)" || die "Tests fail with ${EPYTHON}"
+}
+
+python_install_all() {
+	if use doc; then
+		dohtml -r "${WORKDIR}"/html/.
+		dodoc "${DISTDIR}"/${PN}*pdf
+	fi
+	distutils-r1_python_install_all
+}
+
+python_install() {
+	distutils-r1_python_install ${SCIPY_FCONFIG}
+}
+
+pkg_postinst() {
+	elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER"
+	elog "to your prefered image viewer. Example:"
+	elog "\t echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc"
+}