Version bump (see bug #128066).

Package-Manager: portage-2.1.2_rc1-r5

5 files changed, 173 insertions, 16 deletions

diff --git a/sci-mathematics/Macaulay2/ChangeLog b/sci-mathematics/Macaulay2/ChangeLog
index 0d73703105d8..0ac07e2d1842 100644
--- a/sci-mathematics/Macaulay2/ChangeLog
+++ b/sci-mathematics/Macaulay2/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-mathematics/Macaulay2
-# Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/Macaulay2/ChangeLog,v 1.5 2005/03/23 16:19:35 seemant Exp $
+# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/Macaulay2/ChangeLog,v 1.6 2006/11/12 20:11:09 markusle Exp $
+
+*Macaulay2-0.9.95 (12 Nov 2006)
+
+  12 Nov 2006; Markus Dittrich <markusle@gentoo.org>
+  +files/Macaulay2-0.9.95-etags-gentoo.patch, +Macaulay2-0.9.95.ebuild:
+  Version bump (see bug #128066).
 
   23 Mar 2005; Seemant Kulleen <seemant@gentoo.org> Macaulay2-0.9.2.ebuild:
   change dep from net-www/mozilla to www-client/mozilla
diff --git a/sci-mathematics/Macaulay2/Macaulay2-0.9.95.ebuild b/sci-mathematics/Macaulay2/Macaulay2-0.9.95.ebuild
new file mode 100644
index 000000000000..b8e9e4e21046
--- /dev/null
+++ b/sci-mathematics/Macaulay2/Macaulay2-0.9.95.ebuild
@@ -0,0 +1,66 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-mathematics/Macaulay2/Macaulay2-0.9.95.ebuild,v 1.1 2006/11/12 20:11:09 markusle Exp $
+
+inherit eutils flag-o-matic toolchain-funcs autotools
+
+IUSE=""
+
+DESCRIPTION="research tool for commutative algebra and algebraic geometry"
+SRC_URI="http://www.math.uiuc.edu/Macaulay2/Downloads/${P}-src.tar.gz
+	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Factory/factory-3-0-2.tar.gz \
+	ftp://www.mathematik.uni-kl.de/pub/Math/Singular/Libfac/libfac-3-0-2.tar.gz"
+
+HOMEPAGE="http://www.math.uiuc.edu/Macaulay2/"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~x86"
+
+DEPEND="sys-libs/gdbm
+	dev-libs/gmp
+	dev-libs/ntl
+	dev-libs/boehm-gc
+	virtual/blas
+	virtual/lapack
+	dev-util/ctags
+	sys-libs/ncurses"
+
+src_compile() {
+	epatch "${FILESDIR}"/${P}-etags-gentoo.patch
+
+	cd ${WORKDIR}/factory
+	econf --enable-NTL --prefix=${WORKDIR} || \
+		die "failed to configure factory"
+	emake || die "failed to build factory"
+	make install || die "failed to install factory"
+
+	cd ${WORKDIR}/libfac
+	CPPFLAGS="-I${WORKDIR}/include" ./configure --with-NOSTREAMIO \
+		--prefix=${WORKDIR} || die "failed to configure libfac"
+	make DEFS=-DHAVE_SINGULAR_ERROR || die "failed to build libfac"
+	make install || die "failed to install libfac"
+
+	CXXFLAGS="${CXXFLAGS} -Wno-deprecated"
+	cd ${WORKDIR}/${P}
+	sed -e "/^docm2RelDir/s:Macaulay2:${P}:" \
+		-i include/config.Makefile.in || \
+		die "failed to fix makefile"
+	make && CPPFLAGS="-I/usr/include/gc -I${WORKDIR}/include" \
+		LDFLAGS="-L${WORKDIR}/lib" \
+		./configure --prefix="${D}/usr" --disable-encap \
+		--with-lapacklibs="-llapack -lblas" || \
+		die "failed to configure Macaulay"
+	# fix install paths
+	make || die "failed to build Macaulay"
+}
+
+src_test() {
+	cd ${WORKDIR}/Macaulay2-0.9.2
+	make -k check || die "tests failed"
+}
+
+src_install () {
+	cd ${WORKDIR}/Macaulay2-0.9.2
+	make install || die "install failed"
+}
diff --git a/sci-mathematics/Macaulay2/Manifest b/sci-mathematics/Macaulay2/Manifest
index dfe640715f87..0b9c778d97f5 100644
--- a/sci-mathematics/Macaulay2/Manifest
+++ b/sci-mathematics/Macaulay2/Manifest
@@ -1,6 +1,7 @@
------BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
-
+AUX Macaulay2-0.9.95-etags-gentoo.patch 3807 RMD160 384eb18029577238343507430a6191ce6bd82cbe SHA1 b68f32567b72bd926fd6de97fa5ad10736b1a362 SHA256 5b2eb9d87159fce19ad21551c66c92c55749bebf64760621e9fdbe77daa8fd0e
+MD5 26b11d3b405cf48f99f34be166c4745e files/Macaulay2-0.9.95-etags-gentoo.patch 3807
+RMD160 384eb18029577238343507430a6191ce6bd82cbe files/Macaulay2-0.9.95-etags-gentoo.patch 3807
+SHA256 5b2eb9d87159fce19ad21551c66c92c55749bebf64760621e9fdbe77daa8fd0e files/Macaulay2-0.9.95-etags-gentoo.patch 3807
 AUX gentoo-Macaulay2-0.9.2.diff 10410 RMD160 0e22513f9beca1aae5e0061e6767c0203096db2f SHA1 13b1ff7ed39884fcd16e671b30084783774b1a96 SHA256 11982820a82d78b0721971dcae2e05090b6c0178e9faf4f0b1536227ed6ceca7
 MD5 0926cfa1c448a5d6464a6c0fc04425d6 files/gentoo-Macaulay2-0.9.2.diff 10410
 RMD160 0e22513f9beca1aae5e0061e6767c0203096db2f files/gentoo-Macaulay2-0.9.2.diff 10410
@@ -14,16 +15,23 @@ MD5 02f8c3fb68df6d22a55f92102a3956ee files/gentoo-libfac-0.3.2.include.diff 641
 RMD160 d475e20929a5bc77e7d19fae82c4e68da7d180a8 files/gentoo-libfac-0.3.2.include.diff 641
 SHA256 2947deb0da8cbcae81a2833dcef2dca24b216f911c72c993c12e1534776d75ef files/gentoo-libfac-0.3.2.include.diff 641
 DIST Macaulay2-0.9.2-src.tar.gz 1562476
+DIST Macaulay2-0.9.95-src.tar.gz 2875836 RMD160 f3c5ad889e89d238ca3ede40e692bc42744861a8 SHA1 dbcbc93b0d3f0a43ad947dc704d7ae7427a7c8d2 SHA256 3fd4698d82de76a8356d24dfdba2775794231b5723ee3fda232ce2f0d1e6360a
 DIST factory-1.3b.tar.gz 466264
+DIST factory-3-0-2.tar.gz 503712 RMD160 3cfaa7e438af75fb1c00501099c0d6c88fbfdd8b SHA1 5cce5050fe559a18a076709bf220bddb16914414 SHA256 463a29232f9e187014bd53bb726cf1628f929ee830fa63d445dcc9a45403d8ed
 DIST libfac-0.3.2.tar.gz 83114
+DIST libfac-3-0-2.tar.gz 87369 RMD160 847103ae3fcc870188630028965086c3933a2009 SHA1 fbe2c51559dc439022d4a05afc70691e69210fdc SHA256 3fae688d7471e137834e9f89e5677e2ded4d578942b54ce7efa536817799fa74
 EBUILD Macaulay2-0.9.2.ebuild 2600 RMD160 1b3bf18a002df690b2d302eb61cf97244df681e3 SHA1 a096329abf143529d6bda3513244073baa0801ce SHA256 a18e980fe1de775bb0d7b966235810dc925608b54a87c9b59f2e5f8d11a8fc97
 MD5 b11d53b3b8b20ea3fbe1df72b24eb987 Macaulay2-0.9.2.ebuild 2600
 RMD160 1b3bf18a002df690b2d302eb61cf97244df681e3 Macaulay2-0.9.2.ebuild 2600
 SHA256 a18e980fe1de775bb0d7b966235810dc925608b54a87c9b59f2e5f8d11a8fc97 Macaulay2-0.9.2.ebuild 2600
-MISC ChangeLog 1422 RMD160 830640a2b7056d4698018762fc6634a577e030d5 SHA1 41a6a9e13552c9820b62600de429c29b5bdce10c SHA256 53a41265fe708b5d0f10f49617fa1f63b68dd3aaecc782ce9dee8ad5fbaed76f
-MD5 f4885968bdb7253e06fb43860a7ea631 ChangeLog 1422
-RMD160 830640a2b7056d4698018762fc6634a577e030d5 ChangeLog 1422
-SHA256 53a41265fe708b5d0f10f49617fa1f63b68dd3aaecc782ce9dee8ad5fbaed76f ChangeLog 1422
+EBUILD Macaulay2-0.9.95.ebuild 1976 RMD160 ab3d5b1d3a1549ae259d38933ff2ffd07e1ba0e6 SHA1 e0f79608931e0b9cf660a89601d85f049ee61149 SHA256 2bb30d0170bea74fe2d19c4534100af6c21e39ef69b48a169ccd2af93c714188
+MD5 d0f74c882494aa3be194f63dd2aad99a Macaulay2-0.9.95.ebuild 1976
+RMD160 ab3d5b1d3a1549ae259d38933ff2ffd07e1ba0e6 Macaulay2-0.9.95.ebuild 1976
+SHA256 2bb30d0170bea74fe2d19c4534100af6c21e39ef69b48a169ccd2af93c714188 Macaulay2-0.9.95.ebuild 1976
+MISC ChangeLog 1616 RMD160 39c47611baa939de9aa64fb8c503e544ac49a4e4 SHA1 dfe7ea67313db2d3d7d832e0c8fa69a7154270c2 SHA256 d99246307e4fe4d9cb38042b217a97e96cc2fae4919bdc562e388045d6542066
+MD5 9ebe708264d4018f227b531141db7ac8 ChangeLog 1616
+RMD160 39c47611baa939de9aa64fb8c503e544ac49a4e4 ChangeLog 1616
+SHA256 d99246307e4fe4d9cb38042b217a97e96cc2fae4919bdc562e388045d6542066 ChangeLog 1616
 MISC metadata.xml 467 RMD160 55a9d3716d9efee869202e289dbae72403a6dd1b SHA1 0e5160029c89907b18624b95285472007542f52b SHA256 3f550d75544118b43295756f3246bc13f7f7505ae1c864bbad1eab6c98bc95d4
 MD5 4cee2e2e6dc692ef8144c0d26792fddc metadata.xml 467
 RMD160 55a9d3716d9efee869202e289dbae72403a6dd1b metadata.xml 467
@@ -31,10 +39,6 @@ SHA256 3f550d75544118b43295756f3246bc13f7f7505ae1c864bbad1eab6c98bc95d4 metadata
 MD5 49353124d1f121c795a570079153114d files/digest-Macaulay2-0.9.2 199
 RMD160 eeb4aadb5e3ce7f79ab6b1110b10ab0f23d8caed files/digest-Macaulay2-0.9.2 199
 SHA256 255355def3cd8013d0691a6aaa5857b8044268b855b39c01127253b6ab9eba5d files/digest-Macaulay2-0.9.2 199
------BEGIN PGP SIGNATURE-----
-Version: GnuPG v1.4.4 (GNU/Linux)
-
-iD8DBQFEzjGAwUpWvClEHQoRAk6cAJ9acpbmT5eoz6zUci+MJtLQkYQYYACeIAfj
-vDlJ+q1X/hi2Bm5T7U1LXtw=
-=Swk4
------END PGP SIGNATURE-----
+MD5 cd82649f0bc2d6a6a4fed7e99b4793ea files/digest-Macaulay2-0.9.95 741
+RMD160 3a82694908cc80cbead7ccfd1e469add1481f564 files/digest-Macaulay2-0.9.95 741
+SHA256 a117e6bf87ddc01227f74d12b4661d317e08a70003fca67e50120b4346c9bea6 files/digest-Macaulay2-0.9.95 741
diff --git a/sci-mathematics/Macaulay2/files/Macaulay2-0.9.95-etags-gentoo.patch b/sci-mathematics/Macaulay2/files/Macaulay2-0.9.95-etags-gentoo.patch
new file mode 100644
index 000000000000..47e97185854d
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/Macaulay2-0.9.95-etags-gentoo.patch
@@ -0,0 +1,72 @@
+diff -Naur Macaulay2-0.9.95/Macaulay2/c/Makefile.in Macaulay2-0.9.95-new/Macaulay2/c/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/c/Makefile.in	2006-07-06 11:16:05.000000000 -0400
++++ Macaulay2-0.9.95-new/Macaulay2/c/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -30,7 +30,7 @@
+ ############################## tags
+ all :: tags
+ tags : @srcdir@/TAGS
+-@srcdir@/TAGS: $(SRCFILES); cd @srcdir@ && etags $(SRCFILES)
++@srcdir@/TAGS: $(SRCFILES); cd @srcdir@ && exuberant-ctags $(SRCFILES)
+ ############################## cleaning
+ clean :
+ 	rm -f *.o scc1 scc.a grammar.output grammar.tab.h \
+diff -Naur Macaulay2-0.9.95/Macaulay2/d/Makefile.in Macaulay2-0.9.95-new/Macaulay2/d/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/d/Makefile.in	2006-07-15 18:35:12.000000000 -0400
++++ Macaulay2-0.9.95-new/Macaulay2/d/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -314,7 +314,7 @@
+ tags: @srcdir@/TAGS
+ clean::; rm -f TAGS @srcdir@/TAGS
+ @srcdir@/TAGS: Makefile $(SRCFILES)
+-	cd @srcdir@ && etags $(shell ../util/echoout -r $(SRCFILES))
++	cd @srcdir@ && exuberant-ctags $(shell ../util/echoout -r $(SRCFILES))
+ 
+ clean ::; rm -f *.log a.out *.o *.sym *.a *.oo *.sig *.sg *.dep *.dp core gmon.out mapfile restart.tmp
+ distclean : clean; rm -f Makefile
+diff -Naur Macaulay2-0.9.95/Macaulay2/dumpdata/Makefile.in Macaulay2-0.9.95-new/Macaulay2/dumpdata/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/dumpdata/Makefile.in	2006-05-30 15:16:42.000000000 -0400
++++ Macaulay2-0.9.95-new/Macaulay2/dumpdata/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -14,7 +14,7 @@
+ gdb: checkit; gdb checkit
+ all:: tags
+ tags: @srcdir@/TAGS
+-@srcdir@/TAGS: Makefile @srcdir@/*.h @srcdir@/*.c ; cd @srcdir@ && etags *.h *.c
++@srcdir@/TAGS: Makefile @srcdir@/*.h @srcdir@/*.c ; cd @srcdir@ && exuberant-ctags *.h *.c
+ clean::; rm -f *.o checkit core check-data *.a libdump.a
+ EXTRAOBJS :=
+ # EXTRAOBJS += mmap.o
+diff -Naur Macaulay2-0.9.95/Macaulay2/e/Makefile.in Macaulay2-0.9.95-new/Macaulay2/e/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/e/Makefile.in	2006-06-20 16:26:04.000000000 -0400
++++ Macaulay2-0.9.95-new/Macaulay2/e/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -71,7 +71,7 @@
+ 		 @srcdir@/linalgGB/*.hpp @srcdir@/linalgGB/*.cpp \
+ 		 @srcdir@/f4/*.hpp @srcdir@/f4/*.cpp \
+ 		 statuscodes
+-	cd @srcdir@ && etags $(patsubst @srcdir@/%, %, $^)
++	cd @srcdir@ && exuberant-ctags $(patsubst @srcdir@/%, %, $^)
+ 
+ # the target 'initialize' is used by the Makefile in the parent directory
+ initialize all :: $(addsuffix .hpp, $(GENERATED_H))
+diff -Naur Macaulay2-0.9.95/Macaulay2/html-check-links/Makefile.in Macaulay2-0.9.95-new/Macaulay2/html-check-links/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/html-check-links/Makefile.in	2004-04-03 14:43:21.000000000 -0500
++++ Macaulay2-0.9.95-new/Macaulay2/html-check-links/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -34,7 +34,7 @@
+ ifneq ($(DEPENDS),no)
+ include $(CFILES:.c=.dep)
+ endif
+-TAGS: $(SRC); etags $^
++TAGS: $(SRC); exuberant-ctags $^
+ lex.o : grammar.fixed.c
+ clean:; rm -f	*.o html-check-links *.dep y.tab.h lex.yy.c TAGS y.output \
+ 		core grammar.c grammar.tab.* lex.c grammar.fixed.* grammar.output
+diff -Naur Macaulay2-0.9.95/Macaulay2/regex/Makefile.in Macaulay2-0.9.95-new/Macaulay2/regex/Makefile.in
+--- Macaulay2-0.9.95/Macaulay2/regex/Makefile.in	2005-08-08 14:06:05.000000000 -0400
++++ Macaulay2-0.9.95-new/Macaulay2/regex/Makefile.in	2006-11-11 10:13:07.000000000 -0500
+@@ -33,7 +33,7 @@
+ 	@ echo " ** creating $@ from $<"
+ 	@ $(CC)  -MM $(CPPFLAGS) $< >$*-tmp.dep && <$*-tmp.dep sed 's/\($*\)\.o[ :]*/\1.o $@ : /' >$@ && rm $*-tmp.dep
+ 
+-@srcdir@/TAGS: $(CFILES); cd @srcdir@ && etags $(CFILES)
++@srcdir@/TAGS: $(CFILES); cd @srcdir@ && exuberant-ctags $(CFILES)
+ DEPENDS = yes
+ ifeq "$(DEPENDS)" "yes"
+ include $(CFILES:.c=.dep) $(CCFILES:.cpp=.dep)
diff --git a/sci-mathematics/Macaulay2/files/digest-Macaulay2-0.9.95 b/sci-mathematics/Macaulay2/files/digest-Macaulay2-0.9.95
new file mode 100644
index 000000000000..0a31d1cb256d
--- /dev/null
+++ b/sci-mathematics/Macaulay2/files/digest-Macaulay2-0.9.95
@@ -0,0 +1,9 @@
+MD5 83a7a7fbfa0bc016cc2525cc0f221694 Macaulay2-0.9.95-src.tar.gz 2875836
+RMD160 f3c5ad889e89d238ca3ede40e692bc42744861a8 Macaulay2-0.9.95-src.tar.gz 2875836
+SHA256 3fd4698d82de76a8356d24dfdba2775794231b5723ee3fda232ce2f0d1e6360a Macaulay2-0.9.95-src.tar.gz 2875836
+MD5 9b1fac924bc754339989d617946ea8c4 factory-3-0-2.tar.gz 503712
+RMD160 3cfaa7e438af75fb1c00501099c0d6c88fbfdd8b factory-3-0-2.tar.gz 503712
+SHA256 463a29232f9e187014bd53bb726cf1628f929ee830fa63d445dcc9a45403d8ed factory-3-0-2.tar.gz 503712
+MD5 d94415a24186bfd4bdb6df491a58d173 libfac-3-0-2.tar.gz 87369
+RMD160 847103ae3fcc870188630028965086c3933a2009 libfac-3-0-2.tar.gz 87369
+SHA256 3fae688d7471e137834e9f89e5677e2ded4d578942b54ce7efa536817799fa74 libfac-3-0-2.tar.gz 87369