diff options
| -rw-r--r-- | sci-biology/clustalx/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/clustalx/clustalx-2.0.9.ebuild | 7 | ||||
| -rw-r--r-- | sci-biology/clustalx/files/clustalx-2.0.9-gcc4.3.patch | 13 |
3 files changed, 25 insertions, 4 deletions
diff --git a/sci-biology/clustalx/ChangeLog b/sci-biology/clustalx/ChangeLog index a33f32834a6b..bfe27048960d 100644 --- a/sci-biology/clustalx/ChangeLog +++ b/sci-biology/clustalx/ChangeLog @@ -1,6 +1,13 @@ # ChangeLog for sci-biology/clustalx # Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.16 2008/08/28 21:18:33 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/ChangeLog,v 1.17 2008/09/09 13:31:31 markusle Exp $ + + 09 Sep 2008; Markus Dittrich <markusle@gentoo.org> + +files/clustalx-2.0.9-gcc4.3.patch, clustalx-2.0.9.ebuild: + Added patch to fix gcc-4.3 header issue (bug #237077). Relaxed + dependency on full qt:4 to qt-gui:4 only which should be + sufficient. Finally, keyworded the 2.0.9 ebuild amd64 since it + works fine. *clustalx-2.0.9 (28 Aug 2008) diff --git a/sci-biology/clustalx/clustalx-2.0.9.ebuild b/sci-biology/clustalx/clustalx-2.0.9.ebuild index 58decc180e4d..cc334fa16f60 100644 --- a/sci-biology/clustalx/clustalx-2.0.9.ebuild +++ b/sci-biology/clustalx/clustalx-2.0.9.ebuild @@ -1,6 +1,6 @@ # Copyright 1999-2008 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-2.0.9.ebuild,v 1.1 2008/08/28 21:18:33 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/clustalx/clustalx-2.0.9.ebuild,v 1.2 2008/09/09 13:31:31 markusle Exp $ EAPI=1 @@ -12,16 +12,17 @@ SRC_URI="ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${PV}/${P}-src.tar.gz" LICENSE="clustalw" SLOT="0" -KEYWORDS="~x86" +KEYWORDS="~x86 ~amd64" IUSE="" -DEPEND="x11-libs/qt:4" +DEPEND="x11-libs/qt-gui:4" RDEPEND="sci-biology/clustalw:2" src_unpack() { unpack ${A} cd "${S}" + epatch "${FILESDIR}"/${P}-gcc4.3.patch sed -e "s|colprot.xml|/usr/share/${PN}/colprot.xml|" \ -e "s|coldna.xml|/usr/share/${PN}/coldna.xml|" \ -e "s|colprint.xml|/usr/share/${PN}/colprint.xml|" \ diff --git a/sci-biology/clustalx/files/clustalx-2.0.9-gcc4.3.patch b/sci-biology/clustalx/files/clustalx-2.0.9-gcc4.3.patch new file mode 100644 index 000000000000..59b4b4968ab0 --- /dev/null +++ b/sci-biology/clustalx/files/clustalx-2.0.9-gcc4.3.patch @@ -0,0 +1,13 @@ +# patch to fix missing headers under gcc-4.3 (see bug #237077) + +diff -Naur clustalx-2.0.9/Resources.cpp clustalx-2.0.9.new/Resources.cpp +--- clustalx-2.0.9/Resources.cpp 2008-06-23 06:58:51.000000000 -0400 ++++ clustalx-2.0.9.new/Resources.cpp 2008-09-09 08:57:22.000000000 -0400 +@@ -11,6 +11,7 @@ + #include <QDir> + #include <QFile> + #include <iostream> ++#include <cstdlib> + using namespace std; + + //environment variables |