summaryrefslogtreecommitdiff
diff options
context:
space:
mode:
Diffstat (limited to 'dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild')
-rw-r--r--dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild50
1 files changed, 0 insertions, 50 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild
deleted file mode 100644
index f38c642cea72..000000000000
--- a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild
+++ /dev/null
@@ -1,50 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-MODULE_AUTHOR=LDS
-MODULE_VERSION=1.41
-
-inherit perl-module toolchain-funcs
-
-DESCRIPTION="Read SAM/BAM database files"
-
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
- >=sci-biology/bioperl-1.6.9
- >=sci-biology/samtools-1
-"
-DEPEND="${RDEPEND}
- virtual/perl-ExtUtils-CBuilder
- >=dev-perl/Module-Build-0.420.0
-"
-
-SRC_TEST=skip
-# cannot load its own library, fundamentally b0rken
-
-PATCHES=(
- "${FILESDIR}"/${PN}-1.390.0-samtools-1.patch
-)
-
-src_prepare() {
- find . -type f -exec chmod +w '{}' + || die
- sed \
- -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \
- -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \
- -i Build.PL || die
- sed \
- -e 's|#include "bam.h"|#include "bam/bam.h"|' \
- -e 's|#include "sam.h"|#include "bam/sam.h"|' \
- -e 's|#include "khash.h"|#include "htslib/khash.h"|' \
- -e 's|#include "faidx.h"|#include "htslib/faidx.h"|' \
- -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die
-
- perl-module_src_prepare
-
- tc-export CC
-}