diff options
Diffstat (limited to 'dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild')
-rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild | 50 |
1 files changed, 0 insertions, 50 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild deleted file mode 100644 index f38c642cea72..000000000000 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -MODULE_AUTHOR=LDS -MODULE_VERSION=1.41 - -inherit perl-module toolchain-funcs - -DESCRIPTION="Read SAM/BAM database files" - -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - >=sci-biology/bioperl-1.6.9 - >=sci-biology/samtools-1 -" -DEPEND="${RDEPEND} - virtual/perl-ExtUtils-CBuilder - >=dev-perl/Module-Build-0.420.0 -" - -SRC_TEST=skip -# cannot load its own library, fundamentally b0rken - -PATCHES=( - "${FILESDIR}"/${PN}-1.390.0-samtools-1.patch -) - -src_prepare() { - find . -type f -exec chmod +w '{}' + || die - sed \ - -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ - -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ - -i Build.PL || die - sed \ - -e 's|#include "bam.h"|#include "bam/bam.h"|' \ - -e 's|#include "sam.h"|#include "bam/sam.h"|' \ - -e 's|#include "khash.h"|#include "htslib/khash.h"|' \ - -e 's|#include "faidx.h"|#include "htslib/faidx.h"|' \ - -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die - - perl-module_src_prepare - - tc-export CC -} |