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Diffstat (limited to 'sci-biology/GBrowse/GBrowse-2.48-r1.ebuild')
-rw-r--r--sci-biology/GBrowse/GBrowse-2.48-r1.ebuild71
1 files changed, 0 insertions, 71 deletions
diff --git a/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild b/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild
deleted file mode 100644
index 2fcef3b41aff..000000000000
--- a/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild
+++ /dev/null
@@ -1,71 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-MODULE_AUTHOR=LDS
-inherit perl-module webapp
-
-DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser"
-HOMEPAGE="http://gmod.org/wiki/GBrowse"
-KEYWORDS="~amd64 ~x86"
-IUSE="minimal mysql postgres +sqlite"
-
-SLOT="0"
-WEBAPP_MANUAL_SLOT="yes"
-
-CDEPEND="!<sci-biology/GBrowse-2.44-r1
- >=sci-biology/bioperl-1.6.9
- >=dev-perl/Bio-Graphics-2.09
- >=dev-perl/GD-2.07
- >=dev-perl/CGI-Session-4.02
- dev-perl/IO-String
- dev-perl/JSON
- dev-perl/libwww-perl
- dev-perl/Statistics-Descriptive
- !minimal? (
- dev-perl/Bio-Das
- >=dev-perl/Bio-SamTools-1.20
- dev-perl/Crypt-SSLeay
- dev-perl/DB_File-Lock
- dev-perl/DBI
- mysql? ( dev-perl/DBD-mysql )
- postgres? ( dev-perl/DBD-Pg )
- sqlite? ( dev-perl/DBD-SQLite )
- dev-perl/FCGI
- dev-perl/File-NFSLock
- dev-perl/GD-SVG
- dev-perl/Net-OpenID-Consumer
- dev-perl/Net-SMTP-SSL
- )"
-# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile
-DEPEND="dev-perl/Module-Build
- dev-perl/Capture-Tiny
- ${CDEPEND}"
-RDEPEND="${CDEPEND}"
-
-PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch )
-
-src_configure() {
- webapp_src_preinst
-
-# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse"
- myconf="--conf=/etc/gbrowse2"
- myconf="${myconf} --htdocs=${MY_HTDOCSDIR}"
- myconf="${myconf} --cgibin=${MY_CGIBINDIR}"
- myconf="${myconf} --tmp=/var/tmp/gbrowse2"
- myconf="${myconf} --persistent=/var/db/gbrowse2"
- myconf="${myconf} --databases=/var/db/gbrowse2/databases"
- myconf="${myconf} --installconf=no"
- myconf="${myconf} --installetc=no"
- perl-module_src_configure
-}
-
-src_install() {
- dodir /var/tmp/gbrowse2
- dodir /var/db/gbrowse2/sessions
- dodir /var/db/gbrowse2/userdata
- webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2
- perl-module_src_install
- webapp_src_install
-}