diff options
Diffstat (limited to 'sci-biology/GBrowse/GBrowse-2.48-r1.ebuild')
-rw-r--r-- | sci-biology/GBrowse/GBrowse-2.48-r1.ebuild | 71 |
1 files changed, 0 insertions, 71 deletions
diff --git a/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild b/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild deleted file mode 100644 index 2fcef3b41aff..000000000000 --- a/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild +++ /dev/null @@ -1,71 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -MODULE_AUTHOR=LDS -inherit perl-module webapp - -DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser" -HOMEPAGE="http://gmod.org/wiki/GBrowse" -KEYWORDS="~amd64 ~x86" -IUSE="minimal mysql postgres +sqlite" - -SLOT="0" -WEBAPP_MANUAL_SLOT="yes" - -CDEPEND="!<sci-biology/GBrowse-2.44-r1 - >=sci-biology/bioperl-1.6.9 - >=dev-perl/Bio-Graphics-2.09 - >=dev-perl/GD-2.07 - >=dev-perl/CGI-Session-4.02 - dev-perl/IO-String - dev-perl/JSON - dev-perl/libwww-perl - dev-perl/Statistics-Descriptive - !minimal? ( - dev-perl/Bio-Das - >=dev-perl/Bio-SamTools-1.20 - dev-perl/Crypt-SSLeay - dev-perl/DB_File-Lock - dev-perl/DBI - mysql? ( dev-perl/DBD-mysql ) - postgres? ( dev-perl/DBD-Pg ) - sqlite? ( dev-perl/DBD-SQLite ) - dev-perl/FCGI - dev-perl/File-NFSLock - dev-perl/GD-SVG - dev-perl/Net-OpenID-Consumer - dev-perl/Net-SMTP-SSL - )" -# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile -DEPEND="dev-perl/Module-Build - dev-perl/Capture-Tiny - ${CDEPEND}" -RDEPEND="${CDEPEND}" - -PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch ) - -src_configure() { - webapp_src_preinst - -# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse" - myconf="--conf=/etc/gbrowse2" - myconf="${myconf} --htdocs=${MY_HTDOCSDIR}" - myconf="${myconf} --cgibin=${MY_CGIBINDIR}" - myconf="${myconf} --tmp=/var/tmp/gbrowse2" - myconf="${myconf} --persistent=/var/db/gbrowse2" - myconf="${myconf} --databases=/var/db/gbrowse2/databases" - myconf="${myconf} --installconf=no" - myconf="${myconf} --installetc=no" - perl-module_src_configure -} - -src_install() { - dodir /var/tmp/gbrowse2 - dodir /var/db/gbrowse2/sessions - dodir /var/db/gbrowse2/userdata - webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2 - perl-module_src_install - webapp_src_install -} |