3 files changed, 48 insertions, 0 deletions
diff --git a/sci-biology/phrap/Manifest b/sci-biology/phrap/Manifest
new file mode 100644
index 000000000000..1275fda8b314
--- /dev/null
+++ b/sci-biology/phrap/Manifest
@@ -0,0 +1 @@
+DIST phrap-1.080812-distrib.tar.gz 317350 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052
diff --git a/sci-biology/phrap/metadata.xml b/sci-biology/phrap/metadata.xml
new file mode 100644
index 000000000000..f17a827e3101
--- /dev/null
+++ b/sci-biology/phrap/metadata.xml
@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+</pkgmetadata>
diff --git a/sci-biology/phrap/phrap-1.080812-r1.ebuild b/sci-biology/phrap/phrap-1.080812-r1.ebuild
new file mode 100644
index 000000000000..d6864dc373cb
--- /dev/null
+++ b/sci-biology/phrap/phrap-1.080812-r1.ebuild
@@ -0,0 +1,42 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+DESCRIPTION="Shotgun assembly and alignment utilities"
+HOMEPAGE="http://www.phrap.org/"
+SRC_URI="phrap-${PV}-distrib.tar.gz"
+
+LICENSE="phrap"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+DEPEND=""
+RDEPEND="
+	dev-lang/perl
+	dev-perl/perl-tk"
+
+S="${WORKDIR}"
+
+RESTRICT="fetch"
+
+pkg_nofetch() {
+	einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file"
+	einfo "\"distrib.tar.gz\", then rename it to \"phrap-${PV}-distrib.tar.gz\""
+	einfo "and put it in ${DISTDIR}"
+}
+
+src_prepare() {
+	sed -i 's/CFLAGS=/#CFLAGS=/' makefile || die
+	sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/env perl|' phrapview || die
+}
+
+src_install() {
+	dobin cross_match loco phrap phrapview swat
+	newbin cluster cluster_phrap
+	for i in {general,phrap,swat}.doc ; do
+		newdoc ${i} ${i}.txt
+	done
+}