diff options
Diffstat (limited to 'sys-cluster/openmpi')
| -rw-r--r-- | sys-cluster/openmpi/Manifest | 7 | ||||
| -rw-r--r-- | sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch | 42 | ||||
| -rw-r--r-- | sys-cluster/openmpi/files/openmpi-1.4.1-r22513.patch | 72 | ||||
| -rw-r--r-- | sys-cluster/openmpi/files/openmpi-1.6-hostfile.patch | 16 | ||||
| -rw-r--r-- | sys-cluster/openmpi/files/openmpi-ltdl.patch | 78 | ||||
| -rw-r--r-- | sys-cluster/openmpi/files/openmpi-r24328.patch | 54 | ||||
| -rw-r--r-- | sys-cluster/openmpi/metadata.xml | 19 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.4.3.ebuild | 102 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.4.5.ebuild | 104 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild | 171 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild | 167 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild | 170 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild | 183 | ||||
| -rw-r--r-- | sys-cluster/openmpi/openmpi-1.8.8.ebuild | 183 |
14 files changed, 1368 insertions, 0 deletions
diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest new file mode 100644 index 000000000000..7d0a0704017d --- /dev/null +++ b/sys-cluster/openmpi/Manifest @@ -0,0 +1,7 @@ +DIST openmpi-1.4.3.tar.bz2 6626909 SHA256 220b72b1c7ee35469ff74b4cfdbec457158ac6894635143a33e9178aa3981015 SHA512 c33d5e019ba0b080aa34ecfa085182349da806e4bff26c1bf4dbdc8fb3f8f3c38899b9d96d671e1ae337b523ac9d634ae25c49d9af6eef2bc340c29dba75b1b8 WHIRLPOOL 92349d7bd16ff6e8563df602c215ce98ce5624b38a2975c13832d5b9504691c844206acad4c45376fe53e0116fe591782a3e5f8a132c4ac18ae793470d57db55 +DIST openmpi-1.4.5.tar.bz2 6643760 SHA256 a3857bc69b7d5258cf7fc1ed1581d9ac69110f5c17976b949cb7ec789aae462d SHA512 f89922345cde8978483e397e9016103626db3f1787f9afccaf0f60d59caa2a4409b47b01ac221d60e24e241f2afecb636ca89688bf326dc0ca5c817de96b3e99 WHIRLPOOL 2008bd952f9cc93ead6508267f5a45ee6d9ebf9136e35e25b798400d162173514da73349518bfada4777471c32d315e8556bbee8847a5268719d6b32fd0fd811 +DIST openmpi-1.6.5.tar.bz2 10943881 SHA256 fe37bab89b5ef234e0ac82dc798282c2ab08900bf564a1ec27239d3f1ad1fc85 SHA512 b0ede0264cd9263b8ba59ec51d17ad47b5f20d49d219ca05f7c396d608398d517b2023a46a2535fd6191160d709e4805c4de436dcfee56eda287383bd69f9652 WHIRLPOOL d0288677827c1deba17295ee1b69cd21da294ac314cc49404389b4c286384f9f2f229cae4c4fd62511e7f20abc510998642d6a2edfac3f16f83078f474f8e735 +DIST openmpi-1.7.5.tar.bz2 13286694 SHA256 cb3eef6880537d341d5d098511d390ec853716a6ec94007c03a0d1491b2ac8f2 SHA512 72de2788fa26615a2e7373b5f32e0a2b9e39d56094c45b49348ef19bbb0ea306734b7d3275d76471a18628b5244d882de4ed3595eb46f13683e1c8d2b277f065 WHIRLPOOL 107edd2eeca6e0ce9a9fb9ea1cd920cb1a87e8434390f2ed93279734c61bed63e9942bf2d33081e992d4d892f77a8643abbb58194aa76f7148d8716f1648aa82 +DIST openmpi-1.8.4.tar.bz2 13488749 SHA256 23158d916e92c80e2924016b746a93913ba7fae9fff51bf68d5c2a0ae39a2f8a SHA512 d4c8ce2bd3359cf2e85958b58ba18b52c9cef6676718eb3d948309b164b2f54544f8f8419ef6881c7a51ba268a876cd56e9b2d340a106a16fa25fb9fc3e4eff9 WHIRLPOOL 793f64ad44c2e3451a269bcb53d747d15a01649978d80f13599596e1bdd6a6011b50fdd60222bbe3a4ebe567a4785b2660e3c1eb09bdba77420581a0062480a2 +DIST openmpi-1.8.7.tar.bz2 13228742 SHA256 da629e9bd820a379cfafe15f842ee9b628d7451856085ccc23ee75ab3e1b48c7 SHA512 953e007b00c9753bafc05d13e6f686c9aa47f76f55fcc4eda565174d410de059e07862b7e667d15df13afb80418661d9a8d5ee17fdcc211d3e044992cd9ceede WHIRLPOOL 374edbca97262217dfe405414deff2f6a3cacc06daec56e3356ea76f27804ef3caa3f37050dc8a81f257b83c1ced49fd5f66647c2cba4892fbe4ec9746a6f84e +DIST openmpi-1.8.8.tar.bz2 13231433 SHA256 a28382d1e6a36f4073412dc00836ff2524e42b674da9caf6ca7377baad790b94 SHA512 8ca2e3ebb9d9ba0f33faba9bef76fe95293721b73619cbc18176611074a56c277e9ab6cae7fa6c87ace11f16151c1bc495b2a8dbc8ad064d5a8f89f5d431a660 WHIRLPOOL e36186452978ba7a368c83b84b8b089f6995450fa866b7b8300d32eec7e64a816abf5f301dc716bf25b3b45b987489952ffc4b7057f4407677f2a2df5ee67cdd diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch new file mode 100644 index 000000000000..197430aee6f2 --- /dev/null +++ b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch @@ -0,0 +1,42 @@ +From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001 +From: Justin Bronder <jsbronder@gmail.com> +Date: Mon, 1 Jul 2013 20:37:17 -0400 +Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox + +As described in the comments in the source, Gentoo's own version of +fakeroot, sandbox, also runs into hangs when malloc is overridden. +Sandbox environments can easily be detected by looking for SANDBOX_PID +in the environment. When detected, employ the same fix used for +fakeroot. + +See https://bugs.gentoo.org/show_bug.cgi?id=462602 +--- + opal/mca/memory/linux/hooks.c | 11 +++++++++-- + 1 file changed, 9 insertions(+), 2 deletions(-) + +diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c +index 6a1646f..5ded08c 100644 +--- a/opal/mca/memory/linux/hooks.c ++++ b/opal/mca/memory/linux/hooks.c +@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void) + "fakeroot" build environment that allocates memory during + stat() (see http://bugs.debian.org/531522). It may not be + necessary any more since we're using access(), not stat(). But +- we'll leave the check, anyway. */ ++ we'll leave the check, anyway. ++ ++ This is also an issue when using Gentoo's version of 'fakeroot', ++ sandbox v2.5. Sandbox environments can also be detected fairly ++ easily by looking for SANDBOX_ON. ++ */ ++ + if (getenv("FAKEROOTKEY") != NULL || +- getenv("FAKED_MODE") != NULL) { ++ getenv("FAKED_MODE") != NULL || ++ getenv("SANDBOX_ON") != NULL ) { + return; + } + +-- +1.8.1.5 + diff --git a/sys-cluster/openmpi/files/openmpi-1.4.1-r22513.patch b/sys-cluster/openmpi/files/openmpi-1.4.1-r22513.patch new file mode 100644 index 000000000000..128443be5f9d --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-1.4.1-r22513.patch @@ -0,0 +1,72 @@ +From 9657a0fc671dd0987b6954932a08b680c35f480f Mon Sep 17 00:00:00 2001 +From: Justin Bronder <jsbronder@gmail.com> +Date: Wed, 3 Feb 2010 17:13:13 -0500 +Subject: [PATCH] Backport r22513 + +Per #2201, move the user arguments up to be the first set of argv +after the compiler argv tokens. + +Not closing #2201 yet; there's still discussion on that ticket about +whether we want to do more or not. + +Refs #2201 +cmr:v1.4.2 +cmr:v1.5 + +Author: jsquyres +--- + ompi/tools/wrappers/ompi_wrapper_script.in | 4 +++- + opal/tools/wrappers/opal_wrapper.c | 9 +++++---- + 2 files changed, 8 insertions(+), 5 deletions(-) + +diff --git a/ompi/tools/wrappers/ompi_wrapper_script.in b/ompi/tools/wrappers/ompi_wrapper_script.in +index 24726ad..87fd8a5 100644 +--- a/ompi/tools/wrappers/ompi_wrapper_script.in ++++ b/ompi/tools/wrappers/ompi_wrapper_script.in +@@ -140,13 +140,15 @@ my @exec_argv = (); + + # assemble command + push(@exec_argv, split(' ', $comp)); ++# Per https://svn.open-mpi.org/trac/ompi/ticket/2201, add all the user ++# arguments before anything else. ++push(@exec_argv, @appargs); + if ($want_preproc == 1) { + push(@exec_argv, split(' ', $preproc_flags)); + } + if ($want_compile == 1) { + push(@exec_argv, split(' ', $comp_flags)); + } +-push(@exec_argv, @appargs); + if ($want_link == 1) { + push(@exec_argv, split(' ', $linker_flags)); + push(@exec_argv, split(' ', $libs)); +diff --git a/opal/tools/wrappers/opal_wrapper.c b/opal/tools/wrappers/opal_wrapper.c +index 86ece5b..1b80f53 100644 +--- a/opal/tools/wrappers/opal_wrapper.c ++++ b/opal/tools/wrappers/opal_wrapper.c +@@ -712,6 +712,11 @@ main(int argc, char *argv[]) + exec_argc = 0; + } + ++ /* Per https://svn.open-mpi.org/trac/ompi/ticket/2201, add all the ++ user arguments before anything else. */ ++ opal_argv_insert(&exec_argv, exec_argc, user_argv); ++ exec_argc = opal_argv_count(exec_argv); ++ + /* preproc flags */ + if (flags & COMP_WANT_PREPROC) { + opal_argv_insert(&exec_argv, exec_argc, options_data[user_data_idx].preproc_flags); +@@ -732,10 +737,6 @@ main(int argc, char *argv[]) + exec_argc = opal_argv_count(exec_argv); + } + +- /* add all the user arguments */ +- opal_argv_insert(&exec_argv, exec_argc, user_argv); +- exec_argc = opal_argv_count(exec_argv); +- + /* link flags and libs */ + if (flags & COMP_WANT_LINK) { + opal_argv_insert(&exec_argv, exec_argc, options_data[user_data_idx].link_flags); +-- +1.6.4.4 + diff --git a/sys-cluster/openmpi/files/openmpi-1.6-hostfile.patch b/sys-cluster/openmpi/files/openmpi-1.6-hostfile.patch new file mode 100644 index 000000000000..880c42926166 --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-1.6-hostfile.patch @@ -0,0 +1,16 @@ +Fix default hostfile location (backported r26440) + +https://bugs.gentoo.org/show_bug.cgi?id=420431 + +Patch by Orion Poplawski <orion AT SPAMFREE cora DOT nwra DOT com> +--- a/orte/runtime/orte_mca_params.c ++++ b/orte/runtime/orte_mca_params.c +@@ -225,7 +225,7 @@ int orte_register_params(void) + false, false, 1000, &orte_timeout_usec_per_proc); + + /* default hostfile */ +- asprintf(&orte_default_hostfile, "%s/etc/openmpi-default-hostfile", opal_install_dirs.prefix); ++ asprintf(&orte_default_hostfile, "%s/openmpi-default-hostfile", opal_install_dirs.sysconfdir); + mca_base_param_reg_string_name("orte", "default_hostfile", + "Name of the default hostfile (relative or absolute path, \"none\" to ignore environmental or default MCA param setting)", + false, false, orte_default_hostfile, &orte_default_hostfile); diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch new file mode 100644 index 000000000000..a288ea272473 --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-ltdl.patch @@ -0,0 +1,78 @@ +diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c +--- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600 ++++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600 +@@ -13,7 +13,17 @@ + #include <string.h> + #include <stdlib.h> + +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + + static int do_test(void); + +diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am +--- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600 ++++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600 +@@ -47,7 +47,7 @@ headers = \ + + dlopen_test_SOURCES = dlopen_test.c + dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl +-dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la ++dlopen_test_LDADD = $(LIBLTDL) + + predefined_gap_test_SOURCES = predefined_gap_test.c + predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS) +diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c +--- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600 ++++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600 +@@ -24,7 +24,17 @@ + + #include "opal/constants.h" + #include "opal/mca/mca.h" +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + + #include "components.h" + +diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h +--- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600 ++++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600 +@@ -20,7 +20,17 @@ + #ifndef OMPI_SUPPORT_COMPONENTS_H + #define OMPI_SUPPORT_COMPONENTS_H + +-#include "opal/libltdl/ltdl.h" ++#if OPAL_WANT_LIBLTDL ++ #ifndef __WINDOWS__ ++ #if OPAL_LIBLTDL_INTERNAL ++ #include "opal/libltdl/ltdl.h" ++ #else ++ #include "ltdl.h" ++ #endif ++ #else ++ #include "ltdl.h" ++ #endif ++#endif + #include "opal/mca/mca.h" + + BEGIN_C_DECLS diff --git a/sys-cluster/openmpi/files/openmpi-r24328.patch b/sys-cluster/openmpi/files/openmpi-r24328.patch new file mode 100644 index 000000000000..bbd689d3ae0d --- /dev/null +++ b/sys-cluster/openmpi/files/openmpi-r24328.patch @@ -0,0 +1,54 @@ +From cf054cd92dfac55f3920e805d01c11dcfc2cd4fa Mon Sep 17 00:00:00 2001 +From: jsquyres <jsquyres@cisco.com> +Date: Mon, 28 Mar 2011 12:44:06 -0400 +Subject: [PATCH] Fix some fairly-important typos (!) + +Upstream commit r24328. +--- + test/datatype/ddt_lib.c | 2 +- + test/datatype/ddt_raw.c | 2 +- + test/datatype/opal_ddt_lib.c | 2 +- + 3 files changed, 3 insertions(+), 3 deletions(-) + +diff --git a/test/datatype/ddt_lib.c b/test/datatype/ddt_lib.c +index 015419d..c349384 100644 +--- a/test/datatype/ddt_lib.c ++++ b/test/datatype/ddt_lib.c +@@ -209,7 +209,7 @@ int mpich_typeub2( void ) + + int mpich_typeub3( void ) + { +- int blocklen[2], err = 0, idisp[3]; ++ int blocklen[3], err = 0, idisp[3]; + size_t sz; + MPI_Aint disp[3], lb, ub, ex; + ompi_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; +diff --git a/test/datatype/ddt_raw.c b/test/datatype/ddt_raw.c +index eea9004..7effe65 100644 +--- a/test/datatype/ddt_raw.c ++++ b/test/datatype/ddt_raw.c +@@ -45,7 +45,7 @@ static int test_upper( unsigned int length ) + { + ompi_datatype_t *pdt; + opal_convertor_t * pConv; +- int rc; ++ int rc = OMPI_SUCCESS; + unsigned int i, iov_count, split_chunk, total_length; + size_t max_data; + struct iovec iov[5]; +diff --git a/test/datatype/opal_ddt_lib.c b/test/datatype/opal_ddt_lib.c +index e05bb06..dffd86c 100644 +--- a/test/datatype/opal_ddt_lib.c ++++ b/test/datatype/opal_ddt_lib.c +@@ -759,7 +759,7 @@ int mpich_typeub2( void ) + + int mpich_typeub3( void ) + { +- int blocklen[2], err = 0, idisp[3]; ++ int blocklen[3], err = 0, idisp[3]; + size_t sz; + OPAL_PTRDIFF_TYPE disp[3], lb, ub, ex; + opal_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; +-- +1.7.3.4 + diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml new file mode 100644 index 000000000000..e0d91cd04f60 --- /dev/null +++ b/sys-cluster/openmpi/metadata.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>cluster</herd> + <maintainer> + <email>jsbronder@gentoo.org</email> + </maintainer> + <use> + <flag name='cma'>Enable the CMA (Cross Memory Attach) MCA</flag> + <flag name='cuda'>Add GPU direct support</flag> + <flag name='heterogeneous'>Enable features required for heterogeneous + platform support</flag> + <flag name='romio'>Build the ROMIO MPI-IO component</flag> + <flag name='mpi-threads'>Enable MPI_THREAD_MULTIPLE</flag> + <flag name='numa'>Enable numactl to allow binding processes to CPUs</flag> + <flag name='vt'>Enable bundled VampirTrace support</flag> + <flag name="pbs">Add support for the Portable Batch System (PBS)</flag> + </use> +</pkgmetadata> diff --git a/sys-cluster/openmpi/openmpi-1.4.3.ebuild b/sys-cluster/openmpi/openmpi-1.4.3.ebuild new file mode 100644 index 000000000000..81e08b71e8c3 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.4.3.ebuild @@ -0,0 +1,102 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit eutils fortran-2 multilib flag-o-matic toolchain-funcs + +MY_P=${P/-mpi} + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v1.4/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +RESTRICT="mpi-threads? ( test )" +KEYWORDS="alpha amd64 ia64 ppc ppc64 sparc x86 ~x86-fbsd" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads pbs romio threads vt" +RDEPEND=" + pbs? ( sys-cluster/torque ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec" +DEPEND="${RDEPEND}" + +S=${WORKDIR}/${MY_P} + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --without-slurm) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-progress-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_with pbs tm) \ + $(use_enable ipv6) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.4.5.ebuild b/sys-cluster/openmpi/openmpi-1.4.5.ebuild new file mode 100644 index 000000000000..4118adb8843d --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.4.5.ebuild @@ -0,0 +1,104 @@ +# Copyright 1999-2013 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit eutils fortran-2 multilib flag-o-matic toolchain-funcs + +MY_P=${P/-mpi} + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v1.4/downloads/${MY_P}.tar.bz2" + +LICENSE="BSD" +SLOT="0" +RESTRICT="mpi-threads? ( test )" + +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads pbs romio threads vt" +RDEPEND=" + pbs? ( sys-cluster/torque ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec" +DEPEND="${RDEPEND}" + +S=${WORKDIR}/${MY_P} + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --without-slurm) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-progress-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_with pbs tm) \ + $(use_enable ipv6) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild b/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild new file mode 100644 index 000000000000..6c8f5a3e16da --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.6.5-r1.ebuild @@ -0,0 +1,171 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools eutils fortran-2 multilib flag-o-matic toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_dapl + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm + openmpi_fabrics_sctp" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover + " + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="+cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + >=sys-apps/hwloc-1.3 + dev-libs/libltdl:0 + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_dapl? ( sys-infiniband/dapl ) + openmpi_fabrics_ofed? ( sys-infiniband/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm ) + openmpi_fabrics_sctp? ( net-misc/lksctp-tools ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm ) + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + ) + " +DEPEND="${RDEPEND}" +# TODO: Newer releases of Vampir use otf2 which would resolve the above blockers. + +pkg_setup() { + fortran-2_pkg_setup + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo + +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://svn.open-mpi.org/trac/ompi/ticket/3649 + # https://svn.open-mpi.org/trac/ompi/ticket/3648 + epatch "${FILESDIR}"/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR="config opal/config orte/config ompi/config" eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=( + --enable-mpi-thread-multiple + --enable-opal-multi-threads + ) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_dapl udapl "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_ofed openib "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_fabrics_sctp sctp) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install || die "make install failed" + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check || die "emake check failed" +} diff --git a/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild b/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild new file mode 100644 index 000000000000..b2ca7fc6e308 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.7.5-r1.ebuild @@ -0,0 +1,167 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~alpha ~amd64 ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.7.2 + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-infiniband/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm ) + " +DEPEND="${RDEPEND}" + +pkg_setup() { + fortran-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR=config eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-opal-multi-threads) + fi + + if use fortran; then + if [[ $(tc-getFC) =~ g77 ]]; then + myconf+=(--disable-mpi-f90) + elif [[ $(tc-getFC) =~ if ]]; then + # Enabled here as gfortran compile times are huge with this enabled. + myconf+=(--with-mpi-f90-size=medium) + fi + else + myconf+=(--disable-mpi-f90 --disable-mpi-f77) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "$EPREFIX"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + + # Do not override malloc during build. Works around #462602 + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild b/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild new file mode 100644 index 000000000000..3efd01baf16b --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.4-r4.ebuild @@ -0,0 +1,170 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit autotools cuda eutils flag-o-matic fortran-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="alpha ~amd64 ppc ~ppc64 sparc ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +RDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-infiniband/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm ) + " +DEPEND="${RDEPEND}" + +pkg_setup() { + fortran-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi + + # https://github.com/open-mpi/ompi/issues/163 + epatch "${FILESDIR}"/openmpi-ltdl.patch + + AT_M4DIR=config eautoreconf +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl=external + ) + + if use mpi-threads; then + myconf+=(--enable-mpi-threads + --enable-opal-multi-threads) + fi + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild b/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild new file mode 100644 index 000000000000..f67c8134b024 --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.7-r1.ebuild @@ -0,0 +1,183 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-infiniband/ofed ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl="${EPREFIX}/usr" + ) + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_enable mpi-threads mpi-thread-multiple) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) \ + $(use_enable java) \ + $(use_enable java mpi-java) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} diff --git a/sys-cluster/openmpi/openmpi-1.8.8.ebuild b/sys-cluster/openmpi/openmpi-1.8.8.ebuild new file mode 100644 index 000000000000..741c82fa87af --- /dev/null +++ b/sys-cluster/openmpi/openmpi-1.8.8.ebuild @@ -0,0 +1,183 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +FORTRAN_NEEDED=fortran + +inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib toolchain-funcs versionator + +MY_P=${P/-mpi} +S=${WORKDIR}/${MY_P} + +IUSE_OPENMPI_FABRICS=" + openmpi_fabrics_ofed + openmpi_fabrics_knem + openmpi_fabrics_open-mx + openmpi_fabrics_psm" + +IUSE_OPENMPI_RM=" + openmpi_rm_pbs + openmpi_rm_slurm" + +IUSE_OPENMPI_OFED_FEATURES=" + openmpi_ofed_features_control-hdr-padding + openmpi_ofed_features_connectx-xrc + openmpi_ofed_features_udcm + openmpi_ofed_features_rdmacm + openmpi_ofed_features_dynamic-sl + openmpi_ofed_features_failover" + +DESCRIPTION="A high-performance message passing library (MPI)" +HOMEPAGE="http://www.open-mpi.org" +SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" +LICENSE="BSD" +SLOT="0" +KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux" +IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt + ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" + +REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) + openmpi_rm_pbs? ( !openmpi_rm_slurm ) + openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) + openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" + +MPI_UNCLASSED_DEP_STR=" + vt? ( + !dev-libs/libotf + !app-text/lcdf-typetools + )" + +CDEPEND=" + !sys-cluster/mpich + !sys-cluster/mpich2 + !sys-cluster/mpiexec + dev-libs/libevent + dev-libs/libltdl:0 + >=sys-apps/hwloc-1.9.1[numa?] + sys-libs/zlib + cuda? ( dev-util/nvidia-cuda-toolkit ) + elibc_FreeBSD? ( dev-libs/libexecinfo ) + openmpi_fabrics_ofed? ( sys-infiniband/ofed:* ) + openmpi_fabrics_knem? ( sys-cluster/knem ) + openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) + openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm:* ) + openmpi_rm_pbs? ( sys-cluster/torque ) + openmpi_rm_slurm? ( sys-cluster/slurm ) + openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm:* )" + +RDEPEND="${CDEPEND} + java? ( >=virtual/jre-1.6 )" + +DEPEND="${CDEPEND} + java? ( >=virtual/jdk-1.6 )" + +pkg_setup() { + fortran-2_pkg_setup + java-pkg-opt-2_pkg_setup + + if use mpi-threads; then + echo + ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" + ewarn "default and officially unsupported by upstream." + ewarn "You may stop now and set USE=-mpi-threads" + echo + fi + + echo + elog "OpenMPI has an overwhelming count of configuration options." + elog "Don't forget the EXTRA_ECONF environment variable can let you" + elog "specify configure options if you find them necessary." + echo +} + +src_prepare() { + # Necessary for scalibility, see + # http://www.open-mpi.org/community/lists/users/2008/09/6514.php + if use threads; then + echo 'oob_tcp_listen_mode = listen_thread' \ + >> opal/etc/openmpi-mca-params.conf + fi +} + +src_configure() { + local myconf=( + --sysconfdir="${EPREFIX}/etc/${PN}" + --enable-pretty-print-stacktrace + --enable-orterun-prefix-by-default + --with-hwloc="${EPREFIX}/usr" + --with-libltdl="${EPREFIX}/usr" + ) + + if use fortran; then + myconf+=(--enable-mpi-fortran=all) + else + myconf+=(--enable-mpi-fortran=no) + fi + + if use java; then + # We must always build with the right -source and -target + # flags. Passing flags to javac isn't explicitly supported here + # but we can cheat by overriding the configure test for javac. + export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" + fi + + ! use vt && myconf+=(--enable-contrib-no-build=vt) + + econf "${myconf[@]}" \ + $(use_enable cxx mpi-cxx) \ + $(use_with cma) \ + $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ + $(use_enable romio io-romio) \ + $(use_enable heterogeneous) \ + $(use_enable ipv6) \ + $(use_enable mpi-threads mpi-thread-multiple) \ + $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ + $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ + $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ + $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ + $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ + $(use_enable openmpi_ofed_features_udcm openib-udcm) \ + $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ + $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ + $(use_with openmpi_rm_pbs tm) \ + $(use_with openmpi_rm_slurm slurm) \ + $(use_enable java) \ + $(use_enable java mpi-java) +} + +src_install () { + emake DESTDIR="${D}" install + + # From USE=vt see #359917 + rm "${ED}"/usr/share/libtool &> /dev/null + + # Avoid collisions with libevent + rm -rf "${ED}"/usr/include/event2 &> /dev/null + + # Remove la files, no static libs are installed and we have pkg-config + find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete + + if use java; then + local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar + java-pkg_dojar "${mpi_jar}" + # We don't want to install the jar file twice + # so let's clean after ourselves. + rm "${mpi_jar}" || die + fi + + dodoc README AUTHORS NEWS VERSION || die +} + +src_test() { + # Doesn't work with the default src_test as the dry run (-n) fails. + emake -j1 check +} |