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# Copyright 1999-2024 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
FORTRAN_NEEDED=fortran
DISTUTILS_EXT=1
DISTUTILS_USE_PEP517=meson-python
PYTHON_COMPAT=( pypy3 python3_{10..13} )
PYTHON_REQ_USE="threads(+)"
inherit flag-o-matic fortran-2 distutils-r1
DESCRIPTION="Scientific algorithms library for Python"
HOMEPAGE="
https://scipy.org/
https://github.com/scipy/scipy/
https://pypi.org/project/scipy/
"
if [[ ${PV} == *9999* ]] ; then
inherit git-r3
# Need submodules, so git for now.
EGIT_REPO_URI="https://github.com/scipy/scipy"
EGIT_BRANCH="maintenance/$(ver_cut 1-2).x"
EGIT_SUBMODULES=( '*' )
else
inherit pypi
# Upstream is often behind with doc updates
DOC_PV=1.14.0
SRC_URI+="
doc? (
https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip
)"
if [[ ${PV} != *rc* ]] ; then
KEYWORDS="amd64 arm arm64 ~loong ~ppc ppc64 ~riscv ~s390 ~sparc x86"
fi
fi
LICENSE="BSD LGPL-2"
SLOT="0"
IUSE="doc +fortran test-rust"
# umfpack is technically optional but it's preferred to have it available.
DEPEND="
>=dev-python/numpy-1.23.5:=[lapack,${PYTHON_USEDEP}]
sci-libs/arpack:=
sci-libs/umfpack
virtual/cblas
>=virtual/lapack-3.8
"
RDEPEND="
${DEPEND}
dev-python/pillow[${PYTHON_USEDEP}]
"
BDEPEND="
dev-lang/swig
>=dev-python/cython-3.0.8[${PYTHON_USEDEP}]
>=dev-python/meson-python-0.15.0[${PYTHON_USEDEP}]
>=dev-python/pybind11-2.12.0[${PYTHON_USEDEP}]
>=dev-build/meson-1.1.0
!kernel_Darwin? ( dev-util/patchelf )
virtual/pkgconfig
doc? ( app-arch/unzip )
fortran? (
>=dev-python/pythran-0.16.0[${PYTHON_USEDEP}]
)
test? (
>=dev-python/hypothesis-6.30[${PYTHON_USEDEP}]
)
test-rust? (
dev-python/pooch[${PYTHON_USEDEP}]
)
"
EPYTEST_XDIST=1
distutils_enable_tests pytest
src_unpack() {
default
if use doc; then
unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die
fi
}
python_configure_all() {
DISTUTILS_ARGS=(
-Dblas=blas
-Dlapack=lapack
-Duse-pythran=$(usex fortran true false)
)
# https://bugs.gentoo.org/932721
has_version '>=dev-python/numpy-2.0.0' && filter-lto
}
python_test() {
cd "${BUILD_DIR}/install$(python_get_sitedir)" || die
local EPYTEST_DESELECT=(
# Network
scipy/datasets/tests/test_data.py::TestDatasets::test_existence_all
scipy/datasets/tests/test_data.py::TestDatasets::test_ascent
scipy/datasets/tests/test_data.py::TestDatasets::test_face
scipy/datasets/tests/test_data.py::TestDatasets::test_electrocardiogram
# Precision issue with diff. blas?
scipy/optimize/tests/test__basinhopping.py::Test_Metropolis::test_gh7799
# Crashes with assertion, not a regression
# https://github.com/scipy/scipy/issues/19321
scipy/signal/tests/test_signaltools.py::test_lfilter_bad_object
# timeouts
scipy/sparse/linalg/tests/test_propack.py::test_examples
# hang or incredibly slow
scipy/optimize/tests/test_lsq_linear.py::TestBVLS::test_large_rank_deficient
scipy/optimize/tests/test_lsq_linear.py::TestTRF::test_large_rank_deficient
# TODO
scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
)
local EPYTEST_IGNORE=()
if ! has_version -b "dev-python/pooch[${PYTHON_USEDEP}]" ; then
EPYTEST_IGNORE+=(
scipy/datasets/tests/test_data.py
)
fi
case ${EPYTHON} in
pypy3)
EPYTEST_DESELECT+=(
# fd leaks in tests
# https://github.com/scipy/scipy/issues/19553
scipy/fft/_pocketfft/tests/test_real_transforms.py
# TODO
'scipy/special/tests/test_data.py::test_boost[<Data for expi: expinti_data_long_ipp-expinti_data_long>]'
# missing dict.__ror__
# https://github.com/pypy/pypy/issues/4934
'scipy/sparse/tests/test_dok.py::test_dunder_ror[dok_matrix]'
# mismatched exception message
scipy/optimize/tests/test_hessian_update_strategy.py::TestHessianUpdateStrategy::test_initialize_catch_illegal
)
;;
esac
local -x PYTEST_DISABLE_PLUGIN_AUTOLOAD=1
epytest scipy
}
python_install_all() {
use doc && local HTML_DOCS=( "${WORKDIR}"/html/. )
distutils-r1_python_install_all
}
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