Moved from app-sci/rebase to sci-biology/rebase.

7 files changed, 150 insertions, 0 deletions

diff --git a/sci-biology/rebase/ChangeLog b/sci-biology/rebase/ChangeLog
new file mode 100644
index 000000000000..ea38133eb801
--- /dev/null
+++ b/sci-biology/rebase/ChangeLog
@@ -0,0 +1,52 @@
+# ChangeLog for app-sci/rebase
+# Copyright 2000-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/ChangeLog,v 1.1 2004/12/23 21:26:33 ribosome Exp $
+
+*rebase-412 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +rebase-411.ebuild, +rebase-412.ebuild:
+  Moved from app-sci/rebase to sci-biology/rebase.
+
+  19 Dec 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-409.ebuild:
+  Removed old version.
+
+*rebase-412 (13 Dec 2004)
+
+  13 Dec 2004; Olivier Fisette <ribosome@gentoo.org> rebase-411.ebuild,
+  +rebase-412.ebuild:
+  New version: 412. Added 411 to x86.
+
+  21 Nov 2004; Karol Wojtaszek <sekretarz@gentoo.org> rebase-411.ebuild:
+  Keyworded ~amd64, bug #71858
+
+*rebase-411 (30 Oct 2004)
+
+  30 Oct 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-408.ebuild,
+  rebase-409.ebuild, +rebase-411.ebuild:
+  Removed obsolete version (408). Added to x86 (409). New version (411).
+
+*rebase-409 (29 Sep 2004)
+
+  29 Sep 2004; Olivier Fisette <ribosome@gentoo.org> -rebase-406.ebuild,
+  rebase-408.ebuild, +rebase-409.ebuild:
+  Added x86 to 408. New version 409. Removed old version.
+
+*rebase-408 (10 Aug 2004)
+
+  10 Aug 2004; Olivier Fisette <ribosome@gentoo.org>
+  rebase-406.ebuild:
+  Added to x86.
+  rebase-408.ebuild:
+  Updated package.
+
+  26 Jun 2004; David Holm <dholm@gentoo.org> rebase-406.ebuild:
+  Added to ~ppc.
+
+*rebase-406 (24 Jun 2004)
+
+  24 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  rebase-406.ebuild, metadata.xml :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #45945
+
diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
new file mode 100644
index 000000000000..0c79aa09d2ed
--- /dev/null
+++ b/sci-biology/rebase/Manifest
@@ -0,0 +1,6 @@
+MD5 f788d38f2421bc68d56ad2cad5624e21 rebase-411.ebuild 1113
+MD5 044a99402bef08d3bf89d19726c9ba8c ChangeLog 1456
+MD5 550f8d428f3e75690b43d32df6aa60cd metadata.xml 900
+MD5 72080e01161adc11af2862ed93092686 rebase-412.ebuild 1114
+MD5 04a9c29643e242bfdb170ef425f2a76e files/digest-rebase-411 63
+MD5 c4f5461dd83ed5a1176a07a0786a6af7 files/digest-rebase-412 63
diff --git a/sci-biology/rebase/files/digest-rebase-411 b/sci-biology/rebase/files/digest-rebase-411
new file mode 100644
index 000000000000..28f675aa8dce
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-411
@@ -0,0 +1 @@
+MD5 b4fd60d7da0ce55eeba718fb5ec5718b rebase-411.tar.bz2 177467
diff --git a/sci-biology/rebase/files/digest-rebase-412 b/sci-biology/rebase/files/digest-rebase-412
new file mode 100644
index 000000000000..c804b8ca3654
--- /dev/null
+++ b/sci-biology/rebase/files/digest-rebase-412
@@ -0,0 +1 @@
+MD5 3bedf4f6541926e663dd84dee00c9518 rebase-412.tar.bz2 177515
diff --git a/sci-biology/rebase/metadata.xml b/sci-biology/rebase/metadata.xml
new file mode 100644
index 000000000000..340b0984e467
--- /dev/null
+++ b/sci-biology/rebase/metadata.xml
@@ -0,0 +1,20 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		The Restriction Enzyme data BASE is a collection of information about
+		restriction enzymes and related proteins. It is maintained by New
+		England Biolabs. It contains published and unpublished references,
+		recognition and cleavage sites, isoschizomers, commercial availability,
+		methylation sensitivity, crystal and sequence data. DNA
+		methyltransferases, homing endonucleases, nicking enzymes, specificity
+		subunits and control proteins are also included. More recently,
+		putative DNA methyltransferases and restriction enzymes, as predicted
+		from analysis of genomic sequences, are also listed.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/rebase/rebase-411.ebuild b/sci-biology/rebase/rebase-411.ebuild
new file mode 100644
index 000000000000..c2cf5829be45
--- /dev/null
+++ b/sci-biology/rebase/rebase-411.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-411.ebuild,v 1.1 2004/12/23 21:26:33 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://${PN}.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="x86 ~ppc ~amd64"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+		einfo "Indexing ${PN} for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing ${PN} failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV}
+	fi
+	newdoc REBASE.DOC README
+	if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
+	fi
+}
diff --git a/sci-biology/rebase/rebase-412.ebuild b/sci-biology/rebase/rebase-412.ebuild
new file mode 100644
index 000000000000..2bd9db29380d
--- /dev/null
+++ b/sci-biology/rebase/rebase-412.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rebase/rebase-412.ebuild,v 1.1 2004/12/23 21:26:33 ribosome Exp $
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://${PN}.neb.com"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64"
+IUSE="no-emboss no-rawdb"
+
+src_compile() {
+	# Index the database for use with emboss if emboss is installed and
+	# the user did not explicitly request not to index the database.
+	if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+		einfo "Indexing ${PN} for usage with EMBOSS."
+		mkdir REBASE
+		EMBOSS_DATA=. rebaseextract -auto -infile withrefm.${PV} \
+			-protofile proto.${PV} || die "Indexing ${PN} failed."
+	fi
+}
+
+src_install() {
+	if ! use no-rawdb; then
+		insinto /usr/share/${PN}
+		doins withrefm.${PV} proto.${PV}
+	fi
+	newdoc REBASE.DOC README
+	if [ -e /usr/bin/rebaseextract ] && ! use no-emboss; then
+		insinto /usr/share/EMBOSS/data/REBASE
+		doins REBASE/{embossre.enz,embossre.ref,embossre.sup}
+	fi
+}