diff options
| author |   Pacho Ramos <pacho@gentoo.org> | 2016-10-24 15:06:18 +0200 |
|---|---|---|
| committer | Pacho Ramos <pacho@gentoo.org> | 2016-10-24 15:32:34 +0200 |
| commit | 61b16ca3665661b434fab1f1ce557335f29fb652 (patch) | |
| tree | 7981a3105b0f7d2af5aa3d6a385132a4c9f90242 /dev-perl/Bio-SamTools | |
| parent | Move input_devices_libinput from use.mask to use.stable.mask on ia64 (diff) | |
| download | gentoo-61b16ca3665661b434fab1f1ce557335f29fb652.tar.gz gentoo-61b16ca3665661b434fab1f1ce557335f29fb652.tar.bz2 gentoo-61b16ca3665661b434fab1f1ce557335f29fb652.zip | |
dev-perl/Bio-SamTools: Drop old
Package-Manager: portage-2.3.2
RepoMan-Options: --force
Diffstat (limited to 'dev-perl/Bio-SamTools')
| -rw-r--r-- | dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild | 50 | ||||
| -rw-r--r-- | dev-perl/Bio-SamTools/Manifest | 1 |
2 files changed, 0 insertions, 51 deletions
diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild deleted file mode 100644 index f38c642cea72..000000000000 --- a/dev-perl/Bio-SamTools/Bio-SamTools-1.410.0.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2015 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=5 - -MODULE_AUTHOR=LDS -MODULE_VERSION=1.41 - -inherit perl-module toolchain-funcs - -DESCRIPTION="Read SAM/BAM database files" - -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -RDEPEND=" - >=sci-biology/bioperl-1.6.9 - >=sci-biology/samtools-1 -" -DEPEND="${RDEPEND} - virtual/perl-ExtUtils-CBuilder - >=dev-perl/Module-Build-0.420.0 -" - -SRC_TEST=skip -# cannot load its own library, fundamentally b0rken - -PATCHES=( - "${FILESDIR}"/${PN}-1.390.0-samtools-1.patch -) - -src_prepare() { - find . -type f -exec chmod +w '{}' + || die - sed \ - -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ - -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' \ - -i Build.PL || die - sed \ - -e 's|#include "bam.h"|#include "bam/bam.h"|' \ - -e 's|#include "sam.h"|#include "bam/sam.h"|' \ - -e 's|#include "khash.h"|#include "htslib/khash.h"|' \ - -e 's|#include "faidx.h"|#include "htslib/faidx.h"|' \ - -i lib/Bio/DB/Sam.xs c_bin/bam2bedgraph.c || die - - perl-module_src_prepare - - tc-export CC -} diff --git a/dev-perl/Bio-SamTools/Manifest b/dev-perl/Bio-SamTools/Manifest index 9143d805af78..733a42f0cc53 100644 --- a/dev-perl/Bio-SamTools/Manifest +++ b/dev-perl/Bio-SamTools/Manifest @@ -1,2 +1 @@ -DIST Bio-SamTools-1.41.tar.gz 338745 SHA256 b5d7ca16c96cc9fbee5daceb3268f36011740fe4de92074c17a729bac57c3077 SHA512 6f822cd219ecf86e95bc3a6bde1aebbe5eb8284b21b07ca919618c1422c37e6d182285d1a5e77848c6d5cea0dc74a51705f6bc1a27d44aeeaaa69f1cea58f147 WHIRLPOOL b651ea5059ea46ab5e31d237d3e52d7936921470bbd04133be70f935a47b913dc7f3b154c14d1af52f0ba2f5afc6878a27d88e4bbf9d39023cf786bca70f6696 DIST Bio-SamTools-1.42.tar.gz 337821 SHA256 ef4b736e86442ce61f56ddd94befc302ccc4646cae3c45407e107400c703584c SHA512 6a1f95104ce91a800a314c304915af9d6e1cc477c7d5f42b640d0a27b18cd32c4ad9e261cac5556f4863652570a3c573d34245963fc4b9ade067981b2a329271 WHIRLPOOL 5a216e51173ee5a9a930013718452bcbfbcffe1aa1663f50d567daf17378a50135b1b0b6d750c9aece05de268e730faf6c54963823c037559fb50ed95dda32c7 |